>contig_93_1741:2787 [translation frame +1] MKVVMKDLPKHLDTEKFVTHLRSKHTVNAIDFLRTRGVFRRVAFLDVPVE QCKAFVRYHNNSYYERVKIRCEVHRKIVFEAGCEEEALKRCGRVESIERG PRSVKVTFSKLFLDTLFDEVEKKTLRMAKSTERRDEKDMEYFNTLFFDFQ KVLGKHNRAEVLAREAGVRVAYLEAELVNRTRTFLESNAIYLDGLTGERS KTELIVRDFNVADLPAECETKIAPSETVALLKFCSERDAMRCFKRMEKAE FLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK RNKQSRGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAERIFGE BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= contig_93_1741:2787 [translation frame +1] (349 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 1,269,806 sequences; 405,910,324 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|19173378|ref|NP_597181.1| POLYADENYLATE BINDING PROTEIN 2 [En... 171 2e-41 gi|14488165|emb|CAC42098.1| RBD protein [Chironomus tentans] 82 1e-14 gi|20841566|ref|XP_132316.1| RIKEN cDNA 1200009A02 [Mus musculus] 77 5e-13 gi|12835985|dbj|BAB23448.1| unnamed protein product [Mus musculus] 77 5e-13 gi|19343654|gb|AAH25619.1| Similar to KIAA0682 gene product [Mus... 77 5e-13 gi|21297345|gb|EAA09490.1| ebiP3826 [Anopheles gambiae str. PEST] 76 6e-13 gi|13279134|gb|AAH04289.1|AAH04289 KIAA0682 gene product [Homo s... 75 1e-12 gi|7705365|ref|NP_057280.1| KIAA0682 gene product [Homo sapiens]... 75 1e-12 gi|7662250|ref|NP_055667.1| KIAA0682 gene product [Homo sapiens]... 75 1e-12 gi|24661759|ref|NP_648337.1| CG3335-PA [Drosophila melanogaster]... 74 2e-12 gi|21064855|gb|AAM29657.1| SD14970p [Drosophila melanogaster] 74 2e-12 gi|17542530|ref|NP_502432.1| RNA Binding Domain protein RBD-1 (9... 74 3e-12 gi|23508862|ref|NP_701530.1| hypothetical protein [Plasmodium fa... 70 6e-11 gi|6325369|ref|NP_015437.1| Multiple RNA Binding Domain; essenti... 66 6e-10 gi|7486086|pir||T06154 hypothetical protein F24J7.162 - Arabidop... 65 1e-09 gi|22328805|ref|NP_193696.2| RRM-containing protein; protein id:... 65 1e-09 gi|23484422|gb|EAA19756.1| RNA recognition motif, putative [Plas... 64 3e-09 gi|19112391|ref|NP_595599.1| RNA binding protein; 5 rrm RNA reco... 59 8e-08 gi|464252|sp|P20397|NUCL_XENLA Nucleolin (Protein C23) >gi|10414... 54 3e-06 gi|422617|pir||S32644 nucleolin - African clawed frog >gi|295899... 52 1e-05 gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein cp3... 52 1e-05 gi|128840|sp|P15771|NUCL_CHICK Nucleolin (Protein C23) >gi|70845... 50 6e-05 gi|7446355|pir||S71556 DNA-binding protein CEBP-1 - clove pink >... 49 1e-04 gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Perse... 48 2e-04 gi|19173032|ref|NP_597583.1| NUCLEOLAR PROTEIN OF THE GAR FAMILY... 48 2e-04 gi|13812249|ref|NP_113380.1| polyadenylate binding protein [Guil... 48 2e-04 gi|133248|sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chlorop... 47 3e-04 gi|7446359|pir||T05727 nucleic acid-binding protein - barley >gi... 47 4e-04 gi|7446358|pir||T05725 cp31AHv protein - barley >gi|3550467|emb|... 47 4e-04 gi|7446356|pir||T06232 Ps16 protein - wheat >gi|2443390|dbj|BAA2... 47 4e-04 gi|100903|pir||S23780 nucleic acid-binding protein - maize >gi|1... 47 4e-04 gi|22328520|ref|NP_192643.2| RRM-containing protein; protein id:... 46 7e-04 gi|19074720|ref|NP_586226.1| POLYADENYLATE-BINDING PROTEIN 2 [En... 46 0.001 gi|133246|sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chlorop... 46 0.001 gi|15222009|ref|NP_175322.1| nucleolin, putative; protein id: At... 45 0.001 gi|21750187|dbj|BAC03738.1| unnamed protein product [Homo sapiens] 45 0.001 gi|20862191|ref|XP_141528.1| similar to embryonic poly(A) bindin... 45 0.001 gi|4885511|ref|NP_005372.1| nucleolin [Homo sapiens] >gi|128841|... 45 0.001 gi|13644124|ref|XP_010858.2| similar to Nucleolin (Protein C23) ... 45 0.001 gi|1076251|pir||S50765 RNA-binding protein - common ice plant >g... 45 0.002 gi|23133487|gb|ZP_00115261.1| hypothetical protein [Synechococcu... 45 0.002 gi|12018306|ref|NP_072143.1| nucleolin-related protein NRP [Ratt... 45 0.002 gi|26386129|dbj|BAB31653.2| unnamed protein product [Mus musculus] 45 0.002 gi|24662654|ref|NP_648461.1| CG11726-PA [Drosophila melanogaster... 45 0.002 gi|26252146|gb|AAH40811.1| Similar to hypothetical protein FLJ10... 45 0.002 gi|12850171|dbj|BAB28620.1| unnamed protein product [Mus musculus] 45 0.002 gi|12803083|gb|AAH02343.1|AAH02343 Similar to nucleolin [Homo sa... 44 0.003 gi|24214620|ref|NP_712101.1| RNA-binding protein [Leptospira int... 44 0.003 gi|17026050|dbj|BAB72085.1| hypothetical protein [Macaca fascicu... 44 0.003 gi|15221187|ref|NP_177563.1| glycine-rich RNA-binding protein; p... 44 0.003 gi|21752331|dbj|BAC04171.1| unnamed protein product [Homo sapiens] 44 0.003 gi|14719414|ref|NP_149019.1| boule [Homo sapiens] >gi|14279684|g... 44 0.003 gi|15233670|ref|NP_192644.1| putative protein [Arabidopsis thali... 44 0.003 gi|15530220|gb|AAH13889.1|AAH13889 Unknown (protein for MGC:1119... 44 0.004 gi|12854741|dbj|BAB30121.1| unnamed protein product [Mus musculus] 44 0.004 gi|99565|pir||S15348 RNA-binding protein, 28K - spinach 44 0.004 gi|8922388|ref|NP_060547.1| hypothetical protein FLJ10377 [Homo ... 44 0.004 gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oler... 44 0.004 gi|19032262|emb|CAD18922.1| RNA-binding protein precursor [Perse... 44 0.004 gi|23131628|gb|ZP_00113413.1| hypothetical protein [Prochlorococ... 44 0.004 gi|20847035|ref|XP_129821.1| RIKEN cDNA 4930597B14 [Mus musculus] 44 0.004 gi|15228279|ref|NP_187651.1| hypothetical protein; protein id: A... 44 0.004 gi|14578838|gb|AAK69026.1| boule [Mus musculus] 44 0.004 gi|133247|sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chlorop... 44 0.004 gi|21302834|gb|EAA14979.1| agCP4665 [Anopheles gambiae str. PEST] 43 0.006 gi|15218972|ref|NP_176208.1| chloroplast RNA-binding protein, pu... 43 0.006 gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Ara... 43 0.008 gi|15235241|ref|NP_195137.1| polyadenylate-binding protein 2 (PA... 43 0.008 gi|629557|pir||S49030 RNA-binding protein RNP-D precursor - Arab... 42 0.010 gi|387050|gb|AAA36966.1| nucleolin, C23 42 0.010 gi|15233980|ref|NP_194208.1| 31 kDa ribonucleoprotein, chloropla... 42 0.010 gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabid... 42 0.010 gi|681908|dbj|BAA06521.1| cp31 [Arabidopsis thaliana] 42 0.010 gi|90209|pir||A27441 nucleolin - Chinese hamster 42 0.010 gi|1076305|pir||S53492 RNA-binding protein cp31 precursor - Arab... 42 0.010 gi|128842|sp|P08199|NUCL_MESAU Nucleolin (Protein C23) 42 0.010 gi|99684|pir||S20940 DNA-binding protein - Arabidopsis thaliana 42 0.010 gi|7489207|pir||T03986 transformer-SR ribonucleoprotein - common... 42 0.010 gi|475719|gb|AAA18379.1| RNA-binding protein 2 42 0.010 gi|21295463|gb|EAA07608.1| agCP1371 [Anopheles gambiae str. PEST] 42 0.010 gi|18399701|ref|NP_565513.1| RRM-containing protein; protein id:... 42 0.010 gi|23136705|gb|ZP_00118421.1| hypothetical protein [Cytophaga hu... 42 0.013 gi|21289521|gb|EAA01814.1| agCP12213 [Anopheles gambiae str. PEST] 42 0.013 gi|212412|gb|AAA48983.1| nucleolin/C23 42 0.013 gi|12230584|sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chl... 42 0.013 gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM ... 42 0.017 gi|17543644|ref|NP_500025.1| RNA-binding region containing 2 lik... 42 0.017 gi|6981248|ref|NP_036881.1| nucleolin [Rattus norvegicus] >gi|12... 42 0.017 gi|92559|pir||JH0148 nucleolin - rat 42 0.017 gi|19113513|ref|NP_596721.1| similar to C-term of yeast U4/U6 sp... 42 0.017 gi|253181|gb|AAB22809.1| NSR1=nucleolin homolog [Saccharomyces c... 42 0.017 gi|25148310|ref|NP_741301.1| RNA-binding region containing 2 lik... 42 0.017 gi|6321599|ref|NP_011675.1| nuclear localization sequence bindin... 42 0.017 gi|6502554|gb|AAF14355.1|AF113139_1 nucleolar protein Nop4 [Erem... 42 0.017 gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus] 41 0.022 gi|11045077|emb|CAB41488.2| putative FCA orthologue [Brassica na... 41 0.022 gi|20985309|ref|XP_142058.1| similar to poly(A) binding protein,... 41 0.022 gi|17508585|ref|NP_493022.1| Cleavage stimulation factor family ... 41 0.022 gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Taki... 41 0.022 gi|18150431|gb|AAL61622.1|AF414188_1 FCA gamma [Brassica napus] 41 0.022 gi|13548328|emb|CAC35875.1| putative protein [Arabidopsis thaliana] 41 0.022 gi|22296371|dbj|BAC10140.1| putative ribonucleoprotein [Oryza sa... 41 0.022 gi|15231912|ref|NP_187457.1| RRM-containing protein; protein id:... 41 0.029 gi|15226983|ref|NP_181084.1| chloroplast RNA-binding protein cp3... 41 0.029 gi|15238390|ref|NP_201329.1| polyadenylate-binding protein II (P... 41 0.029 gi|23508396|ref|NP_701065.1| hypothetical protein [Plasmodium fa... 41 0.029 gi|26345390|dbj|BAC36346.1| unnamed protein product [Mus musculus] 40 0.038 gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding p... 40 0.038 gi|2204089|emb|CAB05388.1| FCA gamma [Arabidopsis thaliana] 40 0.038 gi|22328716|ref|NP_680712.1| Flowering time control protein (FCA... 40 0.038 gi|22328713|ref|NP_680711.1| Flowering time control protein (FCA... 40 0.038 gi|17532819|ref|NP_495014.1| pre-mRNA splicing SR Protein RSP-4 ... 40 0.038 gi|1405747|emb|CAA67134.1| PR264/SC35 [Mus musculus] 40 0.038 gi|3023721|sp|O04425|FCA_ARATH Flowering time control protein FC... 40 0.038 gi|2204091|emb|CAB05389.1| FCA delta [Arabidopsis thaliana] 40 0.038 gi|21751099|dbj|BAC03903.1| unnamed protein product [Homo sapiens] 40 0.038 gi|7446357|pir||T06817 RNA-binding protein - garden pea >gi|2330... 40 0.038 gi|266991|sp|P30352|SFR2_CHICK Splicing factor, arginine/serine-... 40 0.038 gi|6755478|ref|NP_035488.1| splicing factor, arginine/serine-ric... 40 0.038 gi|4504715|ref|NP_003810.1| poly(A)-binding protein, cytoplasmic... 40 0.038 gi|17561816|ref|NP_504717.1| RNA recognition motif containing pr... 40 0.038 gi|17532817|ref|NP_495013.1| pre-mRNA splicing SR Protein RSP-4 ... 40 0.038 gi|4506899|ref|NP_003007.1| splicing factor, arginine/serine-ric... 40 0.050 gi|7512684|pir||T34543 hypothetical protein DKFZp434O1221.1 - hu... 40 0.050 gi|7446360|pir||T09108 RNA binding protein, 24K, chloroplast - s... 40 0.050 gi|7106377|ref|NP_035010.1| nucleolin [Mus musculus] >gi|128843|... 40 0.050 gi|20559158|ref|XP_114158.1| similar to dJ148E22.2 (novel PABPC1... 40 0.050 gi|18201888|ref|NP_543022.1| poly(A) binding protein, cytoplasmi... 40 0.050 gi|26325114|dbj|BAC26311.1| unnamed protein product [Mus musculus] 40 0.050 gi|3776057|emb|CAA15498.1| dJ148E22.2 (novel PABPC1 (poly(A)-bin... 40 0.050 gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic ... 40 0.050 gi|13529464|gb|AAH05460.1| nucleolin [Mus musculus] 40 0.050 gi|21358099|ref|NP_652612.1| CG5442-PB [Drosophila melanogaster]... 40 0.050 gi|26341628|dbj|BAC34476.1| unnamed protein product [Mus musculus] 40 0.050 gi|21752539|dbj|BAC04206.1| unnamed protein product [Homo sapiens] 40 0.050 gi|23121895|gb|ZP_00104030.1| hypothetical protein [Prochlorococ... 40 0.050 gi|19569903|gb|AAL92217.1| PROTEIN LOCALIZED IN THE NUCLEOLI. 6/... 40 0.050 gi|22535673|dbj|BAC10847.1| putative splicing factor, arginine/s... 40 0.050 gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic ... 40 0.050 gi|26327461|dbj|BAC27474.1| unnamed protein product [Mus musculus] 40 0.050 gi|20466772|gb|AAM20703.1| putative splicing factor [Arabidopsis... 40 0.065 gi|20067397|emb|CAC84501.1| putative nucleolin [Triturus carnifex] 40 0.065 gi|20804887|dbj|BAB92568.1| putative terminal ear1 [Oryza sativa... 40 0.065 gi|7440062|pir||T06458 nucleolin homolog - garden pea >gi|940288... 40 0.065 gi|23040686|gb|ZP_00072187.1| hypothetical protein [Trichodesmiu... 40 0.065 gi|21553746|gb|AAM62839.1| putative splicing factor [Arabidopsis... 40 0.065 gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein... 40 0.065 gi|18398260|ref|NP_565399.1| RRM-containing protein; protein id:... 40 0.065 gi|21357879|ref|NP_652170.1| CG10837 gene product [Drosophila me... 39 0.085 gi|13435438|gb|AAH04587.1| Unknown (protein for IMAGE:3587950) [... 39 0.085 gi|1076509|pir||S49463 RNA-binding protein RNP1 precursor - kidn... 39 0.085 gi|19705459|ref|NP_599180.1| poly(A) binding protein, cytoplasmi... 39 0.085 gi|6679197|ref|NP_032800.1| poly A binding protein, cytoplasmic ... 39 0.085 gi|13278026|gb|AAH03870.1| poly A binding protein, cytoplasmic 1... 39 0.085 gi|7289885|gb|AAF45484.1| CG10837 gene product [Drosophila melan... 39 0.085 gi|15238140|ref|NP_196597.1| polyadenylate-binding protein II (P... 39 0.085 gi|18425248|gb|AAL69426.1|AC098565_8 Putative RNA-binding protei... 39 0.085 gi|88405|pir||PS0381 polyadenylate-binding protein II - human (f... 39 0.085 gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus] 39 0.085 gi|9837439|gb|AAG00575.1|AF288041_1 splicing factor arginine/ser... 39 0.085 gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nic... 39 0.11 gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabido... 39 0.11 gi|4803739|dbj|BAA77512.1| cold-inducible RNA-binding protein [C... 39 0.11 gi|17508567|ref|NP_493029.1| RNA recognition motif containing pr... 39 0.11 gi|5911800|emb|CAB56042.1| glycine rich RNA binding protein [Cio... 39 0.11 gi|15228102|ref|NP_181259.1| chloroplast RNA-binding protein cp2... 39 0.11 gi|15822705|gb|AAL07519.1| RNA-binding protein precursor [Solanu... 39 0.11 gi|998355|gb|AAA76605.1| colony 1 39 0.11 gi|17538232|ref|NP_502136.1| RNA recognition motif containing pr... 39 0.11 gi|18415425|ref|NP_567594.1| RRM-containing protein; protein id:... 39 0.11 gi|11358671|pir||T47685 probable RNA binding protein - Arabidops... 39 0.14 gi|9843657|emb|CAC03602.1| SC35-like splicing factor SCL30, 30 k... 39 0.14 gi|3183544|sp|P11940|PAB1_HUMAN Polyadenylate-binding protein 1 ... 39 0.14 gi|21667634|gb|AAM74138.1|AF497746_1 U-rich RNA-binding protein ... 39 0.14 gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicoti... 39 0.14 gi|1084415|pir||S46286 RNA-binding protein - wood tobacco >gi|62... 39 0.14 gi|12084110|pdb|1FJE|B Chain B, Solution Structure Of Nucleolin ... 39 0.14 gi|7485284|pir||T01563 hypothetical protein A_TM018A10.14 - Arab... 39 0.14 gi|18411454|ref|NP_567192.1| RRM-containing protein; protein id:... 39 0.14 gi|12229876|sp|Q15097|PAB2_HUMAN Polyadenylate-binding protein 2... 39 0.14 gi|11514582|pdb|1FJC|A Chain A, Solution Structure Of Nucleolin ... 39 0.14 gi|18410283|ref|NP_567021.1| arginine/serine-rich protein SCL30;... 39 0.14 gi|21302083|gb|EAA14228.1| agCP8848 [Anopheles gambiae str. PEST] 39 0.14 gi|23132713|gb|ZP_00114487.1| hypothetical protein [Synechococcu... 39 0.14 gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding... 39 0.14 gi|21355069|ref|NP_650473.1| CG5213-PA [Drosophila melanogaster]... 39 0.14 gi|1350820|sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloro... 38 0.19 gi|9843653|emb|CAC03600.1| splicing factor SC35 [Arabidopsis tha... 38 0.19 gi|1350821|sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloro... 38 0.19 gi|21553535|gb|AAM62628.1| ras-GTPase-activating protein SH3-dom... 38 0.19 gi|15239490|ref|NP_200906.1| NTF2-containing RNA-binding protein... 38 0.19 gi|17979131|gb|AAL49823.1| unknown protein [Arabidopsis thaliana... 38 0.19 gi|15988386|pdb|1H6K|Z Chain Z, Nuclear Cap Binding Complex >gi|... 38 0.19 gi|14091677|gb|AAK53819.1| RNA-binding protein UBP1 [Trypanosoma... 38 0.19 gi|19114289|ref|NP_593377.1| polyadenylate-binding protein [Schi... 38 0.19 gi|7506324|pir||T23934 hypothetical protein R05H10.2 - Caenorhab... 38 0.19 gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specifi... 38 0.19 gi|15237641|ref|NP_201225.1| arginine/serine-rich splicing facto... 38 0.19 gi|173421|gb|AAA35320.1| poly(A)-binding protein 38 0.19 gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic ... 38 0.19 gi|24639833|ref|NP_511047.2| CG3312-PA [Drosophila melanogaster]... 38 0.19 gi|7417424|gb|AAF62554.1| nucleolin [Oncorhynchus mykiss] 38 0.19 gi|15639347|ref|NP_218796.1| RNA-binding protein, putative [Trep... 38 0.19 gi|2582672|emb|CAA75535.1| RNA binding protein [Drosophila melan... 38 0.19 gi|20160777|dbj|BAB89718.1| putative ribonucleoprotein [Oryza sa... 38 0.19 gi|15640189|ref|NP_229816.1| RNA-binding protein [Vibrio cholera... 38 0.19 gi|25146801|ref|NP_497077.2| RNA recognition motif containing pr... 38 0.19 gi|15232464|ref|NP_190991.1| RRM-containing protein; protein id:... 38 0.19 gi|21312912|ref|NP_080502.1| RIKEN cDNA 4932702K14 [Mus musculus... 38 0.19 gi|12002297|gb|AAG43284.1| unknown [Oryza sativa] 38 0.19 gi|459650|gb|AAC46487.1| poly(A) binding protein >gi|515321|gb|A... 38 0.25 gi|23619592|ref|NP_705554.1| u1 small nuclear ribonucleoprotein,... 38 0.25 gi|100376|pir||S18883 ribonucleoprotein precursor - common tobac... 38 0.25 gi|7446342|pir||S77714 RNA-binding protein precursor, 33K - wood... 38 0.25 gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromy... 38 0.25 gi|6226775|sp|O97018|SXL_CHRRU Sex-lethal protein homolog >gi|25... 38 0.25 gi|133249|sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chlorop... 38 0.25 gi|13357168|gb|AAK20025.1|AF234183_1 sex-lethal protein SXL1 [Lu... 38 0.25 gi|585638|sp|P21187|PABP_DROME Polyadenylate-binding protein (Po... 38 0.25 gi|12230585|sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chl... 38 0.25 gi|418855|pir||S30887 polyadenylate-binding protein - fruit fly ... 38 0.25 gi|7446339|pir||T05730 probable RNA-binding protein cp33 precurs... 38 0.25 gi|13357170|gb|AAK20026.1|AF234184_1 sex-lethal protein SXL2 [Lu... 38 0.25 gi|23130748|gb|ZP_00112533.1| hypothetical protein [Prochlorococ... 38 0.25 gi|1438951|gb|AAB04133.1| cutinase negative acting protein 38 0.25 gi|5052976|gb|AAD38787.1|AF153444_1 hnRNP A/B related protein [F... 38 0.25 gi|25071892|ref|XP_122209.2| similar to Polyadenylate-binding pr... 37 0.32 gi|24645618|ref|NP_649982.1| CG6241-PA [Drosophila melanogaster]... 37 0.32 gi|15982706|gb|AAL09839.1| RNA binding protein [Bacteroides frag... 37 0.32 gi|18700020|ref|NP_570951.1| similar to poly(A)-binding protein,... 37 0.32 gi|22507391|ref|NP_683717.1| poly(A) binding protein, cytoplasmi... 37 0.32 gi|15231200|ref|NP_190806.1| chloroplast RNA-binding protein cp3... 37 0.32 gi|17136378|ref|NP_476667.1| CG5119-PA [Drosophila melanogaster]... 37 0.32 gi|681912|dbj|BAA06523.1| cp33 [Arabidopsis thaliana] 37 0.32 gi|21554348|gb|AAM63455.1| unknown [Arabidopsis thaliana] 37 0.32 gi|20560400|ref|XP_061850.4| similar to 46kD arginine/serine-ric... 37 0.32 gi|4468620|emb|CAB38076.1| DAZ protein [Macaca fascicularis] 37 0.32 gi|21288154|gb|EAA00475.1| agCP9314 [Anopheles gambiae str. PEST] 37 0.32 gi|20975276|dbj|BAB92955.1| cold inducible RNA-binding protein a... 37 0.32 gi|2565362|gb|AAB81985.1| Sex-lethal protein [Musca domestica] 37 0.32 gi|6226777|sp|O17310|SXL_MUSDO Sex-lethal protein homolog >gi|25... 37 0.32 gi|23042232|gb|ZP_00073633.1| hypothetical protein [Trichodesmiu... 37 0.32 gi|23123195|gb|ZP_00105330.1| hypothetical protein [Prochlorococ... 37 0.42 gi|3265050|gb|AAC72068.1| DAZ protein [Papio cynocephalus anubis] 37 0.42 gi|15010818|dbj|BAB62188.1| JKTBP1delta6 [Homo sapiens] 37 0.42 gi|23508928|ref|NP_701596.1| polyadenylate-binding protein, puta... 37 0.42 gi|7710036|ref|NP_057899.1| heterogeneous nuclear ribonucleoprot... 37 0.42 gi|12643556|sp|O43251|RBM9_HUMAN Putative RNA-binding protein 9 ... 37 0.42 gi|14110404|ref|NP_112556.1| heterogeneous nuclear ribonucleopro... 37 0.42 gi|21536244|ref|NP_598686.1| RIKEN cDNA 4930471K13 [Mus musculus... 37 0.42 gi|6572237|emb|CAB63054.1| dJ41P2.2 (RNA binding motif protein 9... 37 0.42 gi|19920025|gb|AAM08464.1| hypothetical protein [Dictyostelium d... 37 0.42 gi|26346468|dbj|BAC36885.1| unnamed protein product [Mus musculus] 37 0.42 gi|20073191|gb|AAH27263.1| Similar to RNA binding motif protein ... 37 0.42 gi|7446361|pir||T12196 RNA-binding protein - fava bean (fragment... 37 0.42 gi|18461369|gb|AAL71905.1|AF229058_1 hexaribonucleotide binding ... 37 0.42 gi|7446337|pir||T15542 hypothetical protein C18A3.5 - Caenorhabd... 37 0.42 gi|21757498|dbj|BAC05134.1| unnamed protein product [Homo sapiens] 37 0.42 gi|16549891|dbj|BAB70875.1| unnamed protein product [Homo sapiens] 37 0.42 gi|15231817|ref|NP_190914.1| 29 kDa ribonucleoprotein, chloropla... 37 0.42 gi|19584572|gb|AAL67150.1| RNA binding motif protein 9 [Homo sap... 37 0.42 gi|7446333|pir||JW0079 heterogeneous nuclear ribonucleoprotein h... 37 0.42 gi|12803583|gb|AAH02625.1|AAH02625 Similar to heterogeneous nucl... 37 0.42 gi|21536230|ref|NP_080926.1| RIKEN cDNA 4930471K13 [Mus musculus... 37 0.42 gi|13445285|emb|CAC34967.1| dJ474I3.1 (KIAA1116 protein) [Homo s... 37 0.42 gi|18461363|gb|AAL71902.1|AF229055_1 hexaribonucleotide binding ... 37 0.42 gi|4885423|ref|NP_005454.1| heterogeneous nuclear ribonucleoprot... 37 0.42 gi|17508587|ref|NP_493023.1| RNA recognition motif containing pr... 37 0.42 gi|7657504|ref|NP_055124.1| RNA binding motif protein 9; hexarib... 37 0.42 gi|16716399|ref|NP_444334.1| RNA binding motif protein 9; fox-1 ... 37 0.42 gi|6572238|emb|CAB63055.1| dJ41P2.2 (supported by GENSCAN) [Homo... 37 0.42 gi|26336927|dbj|BAC32147.1| unnamed protein product [Mus musculus] 37 0.42 gi|681904|dbj|BAA06519.1| cp29 [Arabidopsis thaliana] 37 0.42 gi|4758542|ref|NP_004490.1| heterogeneous nuclear ribonucleoprot... 37 0.42 gi|12643764|sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chlor... 37 0.42 gi|7662492|ref|NP_055707.1| KIAA1116 protein [Homo sapiens] >gi|... 37 0.42 gi|20540947|ref|XP_121490.1| hypothetical protein XP_121490 [Hom... 37 0.42 gi|6682989|dbj|BAA88978.1| BFCIRP [Rana catesbeiana] 37 0.42 gi|23483711|gb|EAA19292.1| UBP1 interacting protein 2a [Plasmodi... 37 0.55 gi|26326473|dbj|BAC26980.1| unnamed protein product [Mus musculus] 37 0.55 gi|8573021|gb|AAF77195.1|AC005801_1 PolyA Binding Protein 1 [Lei... 37 0.55 gi|1352709|sp|P20965|PABP_XENLA Polyadenylate-binding protein (P... 37 0.55 gi|20988449|gb|AAH30290.1| Similar to RNA binding motif, single ... 37 0.55 gi|17507779|ref|NP_493049.1| Heterogeneous nuclear ribonucleopro... 37 0.55 gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis] 37 0.55 gi|20257546|gb|AAM15938.1|AF495500_1 envelope glycoprotein [Porc... 37 0.55 gi|26326603|dbj|BAC27045.1| unnamed protein product [Mus musculus] 37 0.55 gi|7446336|pir||T09704 probable arginine/serine-rich splicing fa... 37 0.55 gi|7657506|ref|NP_055298.1| RNA binding motif, single stranded i... 37 0.55 gi|20975278|dbj|BAB92956.1| cold inducible RNA-binding protein b... 37 0.55 gi|7882851|gb|AAF70533.1|AC009603_5 PolyA Binding Protein 1 [Lei... 37 0.55 gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leish... 37 0.55 gi|26334205|dbj|BAC30820.1| unnamed protein product [Mus musculus] 37 0.55 gi|26328705|dbj|BAC28091.1| unnamed protein product [Mus musculus] 37 0.55 gi|26328767|dbj|BAC28122.1| unnamed protein product [Mus musculus] 37 0.55 gi|26342202|dbj|BAC34763.1| unnamed protein product [Mus musculus] 37 0.55 gi|26342432|dbj|BAC34878.1| unnamed protein product [Mus musculus] 37 0.55 gi|26337895|dbj|BAC32633.1| unnamed protein product [Mus musculus] 37 0.55 gi|3116231|dbj|BAA25933.1| MSSP-1 [Gallus gallus] 36 0.72 gi|21429720|gb|AAM50538.1| AT08247p [Drosophila melanogaster] 36 0.72 gi|521090|emb|CAA53824.1| NOP77p [Saccharomyces cerevisiae] 36 0.72 gi|22298986|ref|NP_682233.1| RNA binding protein [Thermosynechoc... 36 0.72 gi|9294322|dbj|BAB02219.1| contains similarity to nucleolin, pro... 36 0.72 gi|16517074|gb|AAL24502.1| deleted in azoospermia 2 [Homo sapiens] 36 0.72 gi|22330045|ref|NP_683386.1| similar to polyadenylate-binding pr... 36 0.72 gi|88609|pir||S19873 single-stranded DNA-binding protein - human 36 0.72 gi|4758122|ref|NP_004072.1| deleted in azoospermia [Homo sapiens... 36 0.72 gi|862465|dbj|BAA04177.1| ss-DNA binding protein 12RNP2 precurso... 36 0.72 gi|24662235|ref|NP_729615.1| CG32062-PB [Drosophila melanogaster... 36 0.72 gi|21298798|gb|EAA10943.1| agCP5868 [Anopheles gambiae str. PEST] 36 0.72 gi|11036658|ref|NP_065097.1| deleted in azoospermia 3 [Homo sapi... 36 0.72 gi|20379668|gb|AAH27617.1| similar to poly(A) binding protein, c... 36 0.72 gi|13569958|ref|NP_112241.1| poly(A)-binding protein, cytoplasmi... 36 0.72 gi|23478194|gb|EAA15348.1| hypothetical protein [Plasmodium yoel... 36 0.72 gi|11036660|ref|NP_065096.1| deleted in azoospermia 2 [Homo sapi... 36 0.72 gi|6325213|ref|NP_015282.1| RNA recognition motif-containing pro... 36 0.72 gi|9652115|gb|AAF91405.1|AF271087_1 deleted in azoospermia [Homo... 36 0.72 gi|22040836|ref|XP_018425.3| similar to deleted in azoospermia [... 36 0.72 gi|15229678|ref|NP_188491.1| nucleolin, putative; protein id: At... 36 0.72 gi|9651959|gb|AAF91331.1|AF248482_1 deleted in azoospermia 4 [Ho... 36 0.72 gi|9652117|gb|AAF91406.1|AF271088_1 deleted in azoospermia [Homo... 36 0.72 gi|17064758|gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [... 36 0.72 gi|21293258|gb|EAA05403.1| agCP8014 [Anopheles gambiae str. PEST] 36 0.72 gi|5007080|gb|AAD37807.1| poly(A)-binding protein [Oryza sativa] 36 0.72 gi|3265054|gb|AAC72070.1| DAZ protein [Macaca mulatta] 36 0.72 gi|20867416|ref|XP_143201.1| similar to polyA-binding protein [T... 36 0.72 gi|21754197|dbj|BAC04474.1| unnamed protein product [Homo sapiens] 36 0.72 gi|24662231|ref|NP_729614.1| CG32062-PD [Drosophila melanogaster... 36 0.72 gi|15239958|ref|NP_196239.1| RRM-containing protein; protein id:... 36 0.72 gi|3249571|gb|AAC72064.1| DAZL1 protein [Papio cynocephalus anubis] 36 0.72 gi|21301750|gb|EAA13895.1| ebiP5999 [Anopheles gambiae str. PEST] 36 0.72 gi|13624461|emb|CAC36889.1| dJ259A10.1 (ssDNA binding protein (S... 36 0.72 gi|15228191|ref|NP_188259.1| polyadenylate-binding protein (PABP... 36 0.72 gi|20821674|ref|XP_124207.1| similar to Polyadenylate-binding pr... 36 0.94 gi|14141216|gb|AAK54351.1| SRp46 splicing factor [Homo sapiens] 36 0.94 gi|4506449|ref|NP_002889.1| RNA binding motif, single stranded i... 36 0.94 gi|2135217|pir||S53612 gene MSSP-2 protein - human 36 0.94 gi|22326619|ref|NP_196191.2| RRM-containing protein; protein id:... 36 0.94 gi|2126567|pir||S58674 RNA-binding protein RbpD - Anabaena varia... 36 0.94 gi|8400722|ref|NP_058522.1| RNA binding motif, single stranded i... 36 0.94 gi|12644371|sp|P98175|RBMA_HUMAN RNA-binding protein 10 (RNA bin... 36 0.94 gi|15341327|gb|AAK95615.1|AF401233_1 BRUNO-like 6 RNA-binding pr... 36 0.94 gi|2570921|gb|AAB82295.1| zipcode-binding protein; beta-actin mR... 36 0.94 gi|9790209|ref|NP_062685.1| RNA binding motif, single stranded i... 36 0.94 gi|23123859|gb|ZP_00105894.1| hypothetical protein [Nostoc punct... 36 0.94 gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Da... 36 0.94 gi|8920429|emb|CAB96420.1| hypothetical protein [Xenopus laevis] 36 0.94 gi|407421|emb|CAA53064.1| SEB4B [Homo sapiens] 36 0.94 gi|18203746|gb|AAH21627.1| RNA binding motif, single stranded in... 36 0.94 gi|18652180|gb|AAL76994.1| RNA binding protein [Elaeis oleifera] 36 0.94 gi|8400724|ref|NP_058523.1| RNA binding motif, single stranded i... 36 0.94 gi|23483169|gb|EAA18926.1| u1 small nuclear ribonucleoprotein 70... 36 0.94 gi|24432030|ref|NP_443072.2| bruno-like 6, RNA binding protein; ... 36 0.94 gi|26347765|dbj|BAC37531.1| unnamed protein product [Mus musculus] 36 0.94 gi|20127479|ref|NP_005667.2| RNA binding motif protein 10 isofor... 36 0.94 gi|21704124|ref|NP_663602.1| RNA binding motif protein 10 [Mus m... 36 0.94 gi|8400718|ref|NP_058520.1| RNA binding motif, single stranded i... 36 0.94 gi|4432958|dbj|BAA19555.1| MSSP-2 [Homo sapiens] 36 0.94 gi|4432957|dbj|BAA19554.1| MSSP-2 [Homo sapiens] 36 0.94 gi|1346591|sp|P29558|MSSP_HUMAN Single-stranded DNA-binding prot... 36 0.94 gi|9759097|dbj|BAB09666.1| gene_id:MJJ3.13~pir||T06154~similar t... 36 0.94 gi|1469167|dbj|BAA09471.1| The KIAA0122 gene product is novel. [... 36 0.94 gi|481241|pir||S38383 SEB4B protein - human (fragment) 36 0.94 gi|453413|emb|CAA54628.1| MSSP-2 [Homo sapiens] 36 0.94 gi|4506447|ref|NP_002888.1| RNA binding motif, single stranded i... 36 0.94 gi|8400720|ref|NP_058521.1| RNA binding motif, single stranded i... 36 0.94 gi|15055543|ref|NP_115285.1| 46kD arginine/serine-rich splicing ... 36 0.94 gi|4191608|gb|AAD09826.1| IGF-II mRNA-binding protein 1 [Homo sa... 35 1.2 gi|6753518|ref|NP_034081.1| insulin-like growth factor 2, bindin... 35 1.2 gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Ara... 35 1.2 gi|6562847|emb|CAB62554.1| heterogeneous nuclear ribonucleoprote... 35 1.2 gi|20806133|ref|NP_620794.1| CTD-binding SR-like protein rA8 [Ra... 35 1.2 gi|3249573|gb|AAC72065.1| DAZL1 protein [Macaca mulatta] 35 1.2 gi|8394239|ref|NP_058622.1| squamous cell carcinoma antigen reco... 35 1.2 gi|6562845|emb|CAB62553.1| heterogeneous nuclear ribonucleoprote... 35 1.2 gi|3249569|gb|AAC72063.1| DAZL1 protein [Pan troglodytes] 35 1.2 gi|9937972|ref|NP_064692.1| RNA binding motif, single stranded i... 35 1.2 gi|7439967|pir||T06979 polyadenylate-binding protein - wheat >gi... 35 1.2 gi|19111882|ref|NP_595090.1| RNA binding protein. [Schizosacchar... 35 1.2 gi|6754222|ref|NP_034578.1| heterogeneous nuclear ribonucleoprot... 35 1.2 gi|7440063|pir||T09648 nucleolin homolog nuM1 - alfalfa >gi|1279... 35 1.2 gi|26328897|dbj|BAC28187.1| unnamed protein product [Mus musculus] 35 1.2 gi|6753608|ref|NP_034151.1| deleted in azoospermia-like [Mus mus... 35 1.2 gi|21294508|gb|EAA06653.1| agCP13525 [Anopheles gambiae str. PEST] 35 1.2 gi|7505166|pir||T16535 hypothetical protein K02F3.11 - Caenorhab... 35 1.2 gi|3273895|gb|AAC24875.1| DAZ protein [Pan troglodytes] 35 1.2 gi|2959896|emb|CAA68233.1| RNA-binding protein [Macaca fascicula... 35 1.2 gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmo... 35 1.2 gi|1658368|gb|AAB63596.1| an autosomal gene similar to the azoos... 35 1.2 gi|7439965|pir||T00768 polyadenylate-binding protein T22J18.7 - ... 35 1.2 gi|26336871|dbj|BAC32119.1| unnamed protein product [Mus musculus] 35 1.2 gi|15219945|ref|NP_173690.1| polyadenylate-binding protein 3 (PA... 35 1.2 gi|23489341|gb|EAA21552.1| dentin phosphoryn [Plasmodium yoelii ... 35 1.2 gi|12313708|gb|AAG50426.1|AF144132_1 DAZL1 [Macaca fascicularis] 35 1.2 gi|4505575|ref|NP_002559.1| poly(A) binding protein, cytoplasmic... 35 1.2 gi|19112906|ref|NP_596114.1| RNA binding ribonucleoprotein [Schi... 35 1.2 gi|16741344|gb|AAH16501.1| Similar to RNA binding motif, single ... 35 1.2 gi|19923387|ref|NP_031388.2| nuclear cap binding protein subunit... 35 1.2 gi|21361352|ref|NP_006537.2| IGF-II mRNA-binding protein 1 [Homo... 35 1.2 gi|12000355|gb|AAG02568.1| single-stranded TG1-3 binding protein... 35 1.2 gi|23129197|gb|ZP_00111030.1| hypothetical protein [Nostoc punct... 35 1.2 gi|15239505|ref|NP_200911.1| glycine-rich RNA-binding protein; p... 35 1.2 gi|17435151|ref|XP_067844.1| similar to polyA-binding protein [H... 35 1.2 gi|13386056|ref|NP_080830.1| nuclear cap binding protein subunit... 35 1.2 gi|4530579|gb|AAD22102.1| Pad-1 [Neurospora crassa] 35 1.2 gi|13786156|ref|NP_112620.1| heterogeneous nuclear ribonucleopro... 35 1.2 gi|25054039|ref|XP_193856.1| expressed sequence AI447644 [Mus mu... 35 1.2 gi|4378711|gb|AAD19638.1| nucleic acid binding factor pRM10 [Rat... 35 1.2 gi|18376336|emb|CAD21082.1| RNA splicing factor Pad-1 [Neurospor... 35 1.2 gi|9651961|gb|AAF91332.1|AF248483_1 deleted in azoospermia 4 [Ho... 35 1.2 gi|12851175|dbj|BAB28963.1| unnamed protein product [Mus musculus] 35 1.2 gi|14731277|ref|XP_042839.1| similar to RNA binding protein [Hom... 35 1.2 gi|8163877|gb|AAF73892.1|AF224345_1 enhancer binding protein-1; ... 35 1.2 gi|26345118|dbj|BAC36208.1| unnamed protein product [Mus musculus] 35 1.2 gi|25145017|ref|NP_497276.2| RNA recognition motif containing pr... 35 1.2 gi|15239637|ref|NP_197404.1| RRM-containing protein; protein id:... 35 1.2 gi|26352049|dbj|BAC39661.1| unnamed protein product [Mus musculus] 35 1.2 gi|2135798|pir||S60109 nuclear cap binding protein-interacting p... 35 1.6 gi|4104919|gb|AAD13337.1| poly(A) binding protein I [Trypanosoma... 35 1.6 gi|15241430|ref|NP_199233.1| nuclear cap binding protein CBP20; ... 35 1.6 gi|1362732|pir||S56750 single stranded D box binding factor 2 - ... 35 1.6 gi|21428546|gb|AAM49933.1| LD40028p [Drosophila melanogaster] 35 1.6 gi|19074456|ref|NP_585962.1| POLYADENYLATE-BINDING PROTEIN 1 [En... 35 1.6 gi|22063425|ref|XP_172625.1| similar to 46kD arginine/serine-ric... 35 1.6 gi|23480827|gb|EAA17281.1| RNA recognition motif, putative [Plas... 35 1.6 gi|11275253|pir||JC7299 transformer-2-like protein - liverwort (... 35 1.6 gi|12053297|emb|CAB66834.1| hypothetical protein [Homo sapiens] 35 1.6 gi|6324937|ref|NP_015006.1| translation initiation factor eIF3 s... 35 1.6 gi|1362731|pir||S56751 single stranded D box binding factor 1 - ... 35 1.6 gi|22329932|ref|NP_174676.2| polyadenylate-binding protein (PABP... 35 1.6 gi|9246977|gb|AAF86232.1|AF248650_1 RNA-binding protein BRUNOL4 ... 35 1.6 gi|19032414|gb|AAL83425.1|AF191501_1 hexaribonucleotide binding ... 35 2.1 gi|25053914|ref|XP_193822.1| similar to hexaribonucleotide bindi... 35 2.1 gi|22655123|gb|AAM98152.1| putative protein [Arabidopsis thaliana] 35 2.1 gi|3249575|gb|AAC72066.1| DAZL1 protein [Cebus apella] 35 2.1 gi|7322081|gb|AAB25519.2| RRM9 [Drosophila melanogaster] 35 2.1 gi|3882096|dbj|BAA34421.1| TAR-binding protein [Drosophila melan... 35 2.1 gi|17137616|ref|NP_477400.1| CG10327-PB [Drosophila melanogaster... 35 2.1 gi|7446349|pir||S72368 single-stranded DNA-binding protein MSSP1... 35 2.1 gi|20891681|ref|XP_147994.1| ataxin 2 binding protein 1 [Mus mus... 35 2.1 gi|17505625|ref|NP_492504.1| RNA recognition motif containing pr... 35 2.1 gi|8671586|gb|AAF78291.1|AF107203_1 ataxin 2-binding protein [Ho... 35 2.1 gi|23125104|gb|ZP_00107052.1| hypothetical protein [Nostoc punct... 35 2.1 gi|19584416|emb|CAD28499.1| hypothetical protein [Homo sapiens] 35 2.1 gi|9843655|emb|CAC03601.1| SC35-like splicing factor SCL28, 28 k... 35 2.1 gi|17136830|ref|NP_476937.1| CG3151-PA [Drosophila melanogaster]... 35 2.1 gi|12643820|sp|Q9NWB1|A2BP_HUMAN Ataxin 2-binding protein >gi|70... 35 2.1 gi|407419|emb|CAA53063.1| SEB4D [Homo sapiens] 35 2.1 gi|3882097|dbj|BAA34422.1| TAR-binding protein [Drosophila melan... 35 2.1 gi|481240|pir||S38382 SEB4D protein - human (fragment) 35 2.1 gi|22538403|ref|NP_061193.2| ataxin 2-binding protein 1 isoform ... 35 2.1 gi|18858571|ref|NP_571566.1| decapentaplegic and Vg-related 1, R... 35 2.1 gi|17137614|ref|NP_477399.1| CG10327-PA [Drosophila melanogaster... 35 2.1 gi|7439994|pir||T06796 glycine-rich RNA-binding protein - garden... 35 2.1 gi|11358856|pir||T51304 splicing factor RSp31 [imported] - Arabi... 35 2.1 gi|23613686|ref|NP_704707.1| RNA-binding protein, putative [Plas... 35 2.1 gi|13874511|dbj|BAB46877.1| hypothetical protein [Macaca fascicu... 35 2.1 gi|22538407|ref|NP_665899.1| ataxin 2-binding protein 1 isoform ... 35 2.1 gi|14192947|ref|NP_059965.1| RNA-binding region (RNP1, RRM) cont... 35 2.1 gi|13122236|emb|CAC32281.1| dJ800J21.2.3 (ssDNA binding protein ... 35 2.1 gi|22538405|ref|NP_665898.1| ataxin 2-binding protein 1 isoform ... 35 2.1 gi|3265048|gb|AAC72067.1| DAZ protein [Papio cynocephalus anubis] 35 2.1 gi|22538409|ref|NP_665900.1| ataxin 2-binding protein 1 isoform ... 35 2.1 gi|18412169|ref|NP_567120.1| arginine/serine-rich splicing facto... 35 2.1 gi|11346383|pir||T47978 splicing factor RSP31 [similarity] - Ara... 35 2.1 gi|12313706|gb|AAG50425.1|AF144131_1 DAZL1 [Callithrix jacchus] 35 2.1 gi|15241854|ref|NP_195873.1| RNA and export factor binding prote... 35 2.1 gi|10946878|ref|NP_067452.1| ataxin 2 binding protein 1; ataxin ... 35 2.1 gi|17136828|ref|NP_476936.1| CG3151-PD [Drosophila melanogaster]... 35 2.1 gi|17979394|gb|AAL49922.1| unknown protein [Arabidopsis thaliana... 34 2.7 gi|25025130|ref|XP_204534.1| similar to nucleolin [Mus musculus] 34 2.7 gi|18423239|ref|NP_568751.1| polyadenylate-binding protein II (P... 34 2.7 gi|17533393|ref|NP_495778.1| RNA binding protein like [Caenorhab... 34 2.7 gi|21295379|gb|EAA07524.1| agCP1716 [Anopheles gambiae str. PEST] 34 2.7 gi|3265052|gb|AAC72069.1| DAZ protein [Macaca mulatta] 34 2.7 gi|8843848|dbj|BAA97374.1| contains similarity to poly(A)-bindin... 34 2.7 gi|23620046|ref|XP_137439.2| similar to nucleolin [Mus musculus] 34 2.7 gi|15228016|ref|NP_181204.1| polyadenylate-binding protein (PABP... 34 2.7 gi|22331744|ref|NP_566958.2| RRM-containing protein; protein id:... 34 2.7 gi|23509865|ref|NP_702532.1| hypothetical protein, conserved [Pl... 34 2.7 gi|6178156|dbj|BAA86200.1| nucleolin like protein CiRGG1 [Ciona ... 34 2.7 gi|21536704|gb|AAM61036.1| contains similarity to poly(A)-bindin... 34 2.7 gi|21293041|gb|EAA05186.1| agCP7024 [Anopheles gambiae str. PEST] 34 2.7 gi|8895698|gb|AAF81070.1|AF223427_1 RRM-containing protein SEB-4... 34 2.7 gi|24640312|ref|NP_727163.1| CG18350-PE [Drosophila melanogaster... 34 3.6 gi|26343509|dbj|BAC35411.1| unnamed protein product [Mus musculus] 34 3.6 gi|15217573|ref|NP_177322.1| polyadenylate-binding protein 5 (PA... 34 3.6 gi|409243|gb|AAA27362.1| RNA-binding protein 34 3.6 gi|24640310|ref|NP_727162.1| CG18350-PD [Drosophila melanogaster... 34 3.6 gi|16330189|ref|NP_440917.1| RNA-binding protein [Synechocystis ... 34 3.6 gi|4502847|ref|NP_001271.1| cold inducible RNA binding protein; ... 34 3.6 gi|10177321|dbj|BAB10647.1| contains similarity to RNA-binding p... 34 3.6 gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding ... 34 3.6 gi|24658231|ref|NP_729054.1| CG32423-PA [Drosophila melanogaster... 34 3.6 gi|500858|dbj|BAA03210.1| 50kDa lectin [Bombyx mori] 34 3.6 gi|1403308|emb|CAA67016.1| sex-lethal [Drosophila subobscura] 34 3.6 gi|7439986|pir||T03586 glycine-rich RNA-binding protein 2 - rice... 34 3.6 gi|4930239|pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domain... 34 3.6 gi|16768648|gb|AAL28543.1| HL01227p [Drosophila melanogaster] 34 3.6 gi|4929888|pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX >gi... 34 3.6 >gi|19173378|ref|NP_597181.1| POLYADENYLATE BINDING PROTEIN 2 [Encephalitozoon cuniculi] gi|19170967|emb|CAD26357.1| POLYADENYLATE BINDING PROTEIN 2 [Encephalitozoon cuniculi] Length = 432 Score = 171 bits (432), Expect = 2e-41 Identities = 126/412 (30%), Positives = 196/412 (46%), Gaps = 71/412 (17%) Query: 1 MKVVMKDLPKHLDTEKFVTHLRSKHTVNAIDFLRT-RGVFRRVAFLDVPVEQCKA-FVRY 58 M++V+K+LP E+ + + R +G FRR+ F+ E+ +RY Sbjct: 20 MRIVVKNLPASTTKEEIEKEFSRHGKITDVFMARNEQGKFRRICFVGYMEEKDGVEAIRY 79 Query: 59 HNNSYYERVKIRCEVHRKIVFEAGCEEEALKRCGR--------VESIERGPRSVKVTFSK 110 + S ++ +I CE R+ E G EE + + R E+ E+ R V + + Sbjct: 80 RDGSLFKNQRIACEEVREGSPEIGESEERMIKYSRKIFIRNVPAEANEQFVRDVFKEYGE 139 Query: 111 LFLDTLFDEVEKK-------------------------TLRMAKSTERRDEKDMEYFNTL 145 + L D E K RM +R +++ E++NTL Sbjct: 140 IEEVGLLDRREGKGAYVKFSRGECALEAYRKVQFIGGVKARMCPWKDRAEKRQYEHYNTL 199 Query: 146 FFDFQKVLGKHNRAEVLA---------REAGVRVAYLEAELVNRTRTFLESNAIYLDGLT 196 FF F+ ++ + +E ++ ++ G R+A +E LV T+ FLESN IYLD LT Sbjct: 200 FFSFESIVKRICESERVSIRDVVDVNDKDLGARMARIETHLVQETKKFLESNGIYLDHLT 259 Query: 197 GERSKTELIVRDFNVAD----LPAECETKIAPSETVALLKFCSERDAMRCFKRMEK---- 248 G + LIVR+ + + C+ +APS+ +ALLKF E DA RC++++ Sbjct: 260 GSVDRNMLIVRNMELMKCLDLVDDRCKISVAPSKCLALLKFDKEEDARRCYRKLSLKRVK 319 Query: 249 -----AEFLPLSTKPGKVAATSTK-------------LVVKNVPFQADAQELRKLFQTKA 290 E+ P+ + P +K L+++NVPFQA +E+RK+F + Sbjct: 320 EHVVYCEYAPICSVPESTGEEPSKRPPEEASGQLMNKLLIRNVPFQASKEEIRKIFGS-F 378 Query: 291 QVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQS 342 V VRIPVKR SRGF FV S +D +E FG STHLYGRRLV+E++ Sbjct: 379 HVVDVRIPVKREGSSRGFCFVTLNSPDDVTAAIEHFGSSTHLYGRRLVLERA 430 >gi|14488165|emb|CAC42098.1| RBD protein [Chironomus tentans] Length = 849 Score = 82.0 bits (201), Expect = 1e-14 Identities = 40/80 (50%), Positives = 58/80 (72%), Gaps = 1/80 (1%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRN-KQSRGFAFVECASREDAQKIL 323 STK++V+N+PFQA+A E+R+LFQ ++KAVR+P K Q RGF F++ ++ DA+ Sbjct: 720 STKIMVRNIPFQANANEIRQLFQVFGELKAVRLPKKPGIDQHRGFGFIDFVTKSDAKSAF 779 Query: 324 EWFGVSTHLYGRRLVIEQSA 343 + STHLYGRRLV+E +A Sbjct: 780 DALHHSTHLYGRRLVLEWAA 799 Score = 44.7 bits (104), Expect = 0.002 Identities = 58/280 (20%), Positives = 107/280 (37%), Gaps = 74/280 (26%) Query: 118 DEVEKKTLRMAKSTE-RRDEKDMEYFNTLFFD-------FQKVLGKHNRAEVLAREAG-- 167 DE + K + + E ++ +NTLF KV GK ++ EVL G Sbjct: 402 DESDPKNFKDKRRKELKKTASSAHNWNTLFMGTNAVAEIISKVYGK-SKEEVLESSTGGS 460 Query: 168 ---VRVAYLEAELVNRTRTFLESNAIYLDGLTGE---RSKTELIVRDFNVADLPAECETK 221 VR+A E + V +TFLE + + L+ + RSKT ++V++ E ++K Sbjct: 461 GAAVRLALGETQAVLDMKTFLEKHGVRLESFDDQKVKRSKTIILVKNLPANTDVEEMKSK 520 Query: 222 -----------IAPSETVALLKFCSERDAMRCFKRMEKAEF----LPLSTKPGKV----- 261 + P+ L+KF +A + FK++ ++F L L P V Sbjct: 521 FEQFGVLDKVVLPPNSVTCLIKFADPSEARKAFKKLAYSKFKHVPLYLEWAPENVFRDKD 580 Query: 262 -------------------------------AATSTKLVVKNVPFQADAQELRKLFQTKA 290 +T L +KN+ + +R++F+ Sbjct: 581 EDIEENVNEAKEESAQNEDKNKEEEEVDDSAPEPNTTLFIKNLNKDTVEETIREIFKNIG 640 Query: 291 QVKAVRIPVKRNKQSR------GFAFVECASREDAQKILE 324 +++++I K++ G+ F++ A K L+ Sbjct: 641 TIRSIQIAKKKSTDDEKKLIPLGYGFIQFKQASAADKALK 680 Score = 40.4 bits (93), Expect = 0.038 Identities = 22/61 (36%), Positives = 36/61 (58%), Gaps = 1/61 (1%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEW 325 ++L+VKN+P + Q+LRKLF+ K V V++ K K R F F+ + AQ+ + + Sbjct: 2 SRLIVKNLPKVVNEQKLRKLFEQKGPVTDVQLKYKDGK-FRQFGFIGYENEGSAQEAVNY 60 Query: 326 F 326 F Sbjct: 61 F 61 Score = 32.7 bits (73), Expect = 7.9 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 2 KVVMKDLPKHLDTEKFVTHLRSKHTVNAIDFLRTRGVFRRVAFLDVPVE-QCKAFVRYHN 60 ++++K+LPK ++ +K K V + G FR+ F+ E + V Y N Sbjct: 3 RLIVKNLPKVVNEQKLRKLFEQKGPVTDVQLKYKDGKFRQFGFIGYENEGSAQEAVNYFN 62 Query: 61 NSYYERVKIRCEV 73 ++++ KI+ EV Sbjct: 63 DTFFGTSKIKVEV 75 >gi|20841566|ref|XP_132316.1| RIKEN cDNA 1200009A02 [Mus musculus] Length = 563 Score = 76.6 bits (187), Expect = 5e-13 Identities = 41/103 (39%), Positives = 62/103 (59%), Gaps = 2/103 (1%) Query: 240 MRCFKRMEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV 299 +R +R K K T++K++V+N+PFQA+ +E+R+LF T ++K VR+P Sbjct: 409 VRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPK 468 Query: 300 KRNKQS--RGFAFVECASREDAQKILEWFGVSTHLYGRRLVIE 340 K RGF FV+ +++DA+K STHLYGRRLV+E Sbjct: 469 KMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 511 Score = 39.3 bits (90), Expect = 0.085 Identities = 35/147 (23%), Positives = 64/147 (42%), Gaps = 24/147 (16%) Query: 129 KSTERRDEKDMEYFNTLFFDFQKVLG----KHN--RAEVLAREA----GVRVAYLEAELV 178 ++ ++ + +NTLF V K+N +++V E VRVA E +LV Sbjct: 109 EAMDKANSSSSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETRGSVAVRVALGETQLV 168 Query: 179 NRTRTFLESNAIYLDGLT---GERSKTELIVRDFNVADLPAECE-----------TKIAP 224 R+FL N + LD + ERSKT ++ ++ L AE + + Sbjct: 169 QEVRSFLIDNGVCLDSFSQAAAERSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE 228 Query: 225 SETVALLKFCSERDAMRCFKRMEKAEF 251 A+++F +A + F+ + ++F Sbjct: 229 GGITAIVEFLEPLEARKAFRHLAYSKF 255 Score = 37.7 bits (86), Expect = 0.25 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQ----SRGFAFVECASREDAQKIL 323 L +KN+ F + L+ +F +K+ I K+NK S GF FVE E AQK L Sbjct: 335 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 394 Query: 324 E 324 + Sbjct: 395 K 395 >gi|12835985|dbj|BAB23448.1| unnamed protein product [Mus musculus] Length = 590 Score = 76.6 bits (187), Expect = 5e-13 Identities = 41/103 (39%), Positives = 62/103 (59%), Gaps = 2/103 (1%) Query: 240 MRCFKRMEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV 299 +R +R K K T++K++V+N+PFQA+ +E+R+LF T ++K VR+P Sbjct: 436 VRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPK 495 Query: 300 KRNKQS--RGFAFVECASREDAQKILEWFGVSTHLYGRRLVIE 340 K RGF FV+ +++DA+K STHLYGRRLV+E Sbjct: 496 KMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 538 Score = 39.3 bits (90), Expect = 0.085 Identities = 35/147 (23%), Positives = 64/147 (42%), Gaps = 24/147 (16%) Query: 129 KSTERRDEKDMEYFNTLFFDFQKVLG----KHN--RAEVLAREA----GVRVAYLEAELV 178 ++ ++ + +NTLF V K+N +++V E VRVA E +LV Sbjct: 136 EAMDKANSSSSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETRGSVAVRVALGETQLV 195 Query: 179 NRTRTFLESNAIYLDGLT---GERSKTELIVRDFNVADLPAECE-----------TKIAP 224 R+FL N + LD + ERSKT ++ ++ L AE + + Sbjct: 196 QEVRSFLIDNGVCLDSFSQAAAERSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE 255 Query: 225 SETVALLKFCSERDAMRCFKRMEKAEF 251 A+++F +A + F+ + ++F Sbjct: 256 GGITAIVEFLEPLEARKAFRHLAYSKF 282 Score = 37.7 bits (86), Expect = 0.25 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQ----SRGFAFVECASREDAQKIL 323 L +KN+ F + L+ +F +K+ I K+NK S GF FVE E AQK L Sbjct: 362 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 421 Query: 324 E 324 + Sbjct: 422 K 422 Score = 33.9 bits (76), Expect = 3.6 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQK 321 A S +L V+N+ + + ++L KLF + + P+ K+ +GFAFV E A K Sbjct: 35 ADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 94 >gi|19343654|gb|AAH25619.1| Similar to KIAA0682 gene product [Mus musculus] gi|21707580|gb|AAH34010.1| Unknown (protein for MGC:18721) [Mus musculus] Length = 952 Score = 76.6 bits (187), Expect = 5e-13 Identities = 41/103 (39%), Positives = 62/103 (59%), Gaps = 2/103 (1%) Query: 240 MRCFKRMEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV 299 +R +R K K T++K++V+N+PFQA+ +E+R+LF T ++K VR+P Sbjct: 798 VRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPK 857 Query: 300 KRNKQS--RGFAFVECASREDAQKILEWFGVSTHLYGRRLVIE 340 K RGF FV+ +++DA+K STHLYGRRLV+E Sbjct: 858 KMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 900 Score = 39.3 bits (90), Expect = 0.085 Identities = 35/147 (23%), Positives = 64/147 (42%), Gaps = 24/147 (16%) Query: 129 KSTERRDEKDMEYFNTLFFDFQKVLG----KHN--RAEVLAREA----GVRVAYLEAELV 178 ++ ++ + +NTLF V K+N +++V E VRVA E +LV Sbjct: 498 EAMDKANSSSSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETRGSVAVRVALGETQLV 557 Query: 179 NRTRTFLESNAIYLDGLT---GERSKTELIVRDFNVADLPAECE-----------TKIAP 224 R+FL N + LD + ERSKT ++ ++ L AE + + Sbjct: 558 QEVRSFLIDNGVCLDSFSQAAAERSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE 617 Query: 225 SETVALLKFCSERDAMRCFKRMEKAEF 251 A+++F +A + F+ + ++F Sbjct: 618 GGITAIVEFLEPLEARKAFRHLAYSKF 644 Score = 37.7 bits (86), Expect = 0.25 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQ----SRGFAFVECASREDAQKIL 323 L +KN+ F + L+ +F +K+ I K+NK S GF FVE E AQK L Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783 Query: 324 E 324 + Sbjct: 784 K 784 Score = 33.9 bits (76), Expect = 3.6 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQK 321 A S +L V+N+ + + ++L KLF + + P+ K+ +GFAFV E A K Sbjct: 397 ADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 456 >gi|21297345|gb|EAA09490.1| ebiP3826 [Anopheles gambiae str. PEST] Length = 810 Score = 76.3 bits (186), Expect = 6e-13 Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 4/89 (4%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQS----RGFAFVECA 314 G T K++V+N+PFQA A+E+R LF+ +K++R+P K + RGF FVE Sbjct: 705 GAQKQTGCKILVRNIPFQASAKEVRDLFKPFGDIKSLRLPKKMAASADDTHRGFCFVEYD 764 Query: 315 SREDAQKILEWFGVSTHLYGRRLVIEQSA 343 DA++ + G STHLYGRRLV+E +A Sbjct: 765 EESDAKRAFDTLGRSTHLYGRRLVLEWAA 793 Score = 43.5 bits (101), Expect = 0.004 Identities = 60/294 (20%), Positives = 113/294 (38%), Gaps = 84/294 (28%) Query: 109 SKLFLDTLFDEVEKKTLRMAKSTERRDEKDMEYFNTLFFDFQKVLGKHNRAEVLAREAG- 167 +K+ D D+ + + T+++ + +NTLF +G++ AE +A++ G Sbjct: 382 AKVPSDEAADDDTTDYRKKKEQTQKKTAQSSHNWNTLF------MGENAVAEAVAKKYGT 435 Query: 168 ----------------VRVAYLEAELVNRTRTFLESNAIYLDGLT---GERSKTELIVRD 208 VR+A E ELV +FL+ N I LD + +RS T ++ ++ Sbjct: 436 TKEQILISSEGDTSAAVRLALGETELVLEMESFLKENGISLDAFSSTDAKRSSTVILAKN 495 Query: 209 FNVADLPAECETKIA-----------PSETVALLKFCSERDAMRCFKRMEKAEF--LPL- 254 A A PS A+++F +A + FK++ + F LPL Sbjct: 496 LAPGCTAAALRKLFAPFGLLGRVVLPPSAVTAVIEFLDPSEARKAFKKLAYSMFESLPLY 555 Query: 255 -----------------STKPGKVAATS---------------------TKLVVKNVPFQ 276 ST+ ++T+ T L +KN+ F Sbjct: 556 LEWAPVGTFTSGPSGPPSTEEPSKSSTAPENASNATEEATVDDTEPEEGTTLFIKNLSFT 615 Query: 277 ADAQELRKLFQTKAQVKAVRIPVKRN------KQSRGFAFVECASREDAQKILE 324 + +R+ F+ + V++ + +SRG+ F++ R+ A L+ Sbjct: 616 TNEDAIRERFRCVGAIHMVQVVRSMDLSGNGRNESRGYGFIQFKRRQVADYALK 669 Score = 33.9 bits (76), Expect = 3.6 Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEW 325 ++++VKN+P D ++R F T + V++ + R F F+ S E A K + Sbjct: 2 SRIIVKNIPNGYDEAKVRSHFSTCGIITDVQLKYTSEGKFRNFGFIGFESEEQATKAIAH 61 Query: 326 FGVS 329 F S Sbjct: 62 FNNS 65 >gi|13279134|gb|AAH04289.1|AAH04289 KIAA0682 gene product [Homo sapiens] gi|13544005|gb|AAH06137.1|AAH06137 Unknown (protein for MGC:13068) [Homo sapiens] Length = 960 Score = 75.1 bits (183), Expect = 1e-12 Identities = 36/79 (45%), Positives = 56/79 (70%), Gaps = 2/79 (2%) Query: 264 TSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQS--RGFAFVECASREDAQK 321 T++K++V+N+PFQA ++E+R+LF T ++K VR+P K RGF FV+ +++DA++ Sbjct: 830 TTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKR 889 Query: 322 ILEWFGVSTHLYGRRLVIE 340 STHLYGRRLV+E Sbjct: 890 AFNALCHSTHLYGRRLVLE 908 Score = 40.0 bits (92), Expect = 0.050 Identities = 23/61 (37%), Positives = 33/61 (53%), Gaps = 4/61 (6%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQ----SRGFAFVECASREDAQKIL 323 L +KN+ F ++L+++F VK+ I K+NK S GF FVE E AQK L Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791 Query: 324 E 324 + Sbjct: 792 K 792 Score = 35.8 bits (81), Expect = 0.94 Identities = 19/60 (31%), Positives = 32/60 (52%), Gaps = 1/60 (1%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQK 321 A S +L V+N+P+ + ++L KLF + + P+ K+ +GFAF+ E A K Sbjct: 399 AESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458 Score = 33.5 bits (75), Expect = 4.7 Identities = 18/64 (28%), Positives = 32/64 (49%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEW 325 ++L+VKN+P + R+LF + + ++ + R F F+ S E+AQK + Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61 Query: 326 FGVS 329 F S Sbjct: 62 FNKS 65 >gi|7705365|ref|NP_057280.1| KIAA0682 gene product [Homo sapiens] gi|7512883|pir||T17297 hypothetical protein DKFZp586F1023.1 - human gi|5912081|emb|CAB55987.1| hypothetical protein [Homo sapiens] Length = 960 Score = 75.1 bits (183), Expect = 1e-12 Identities = 36/79 (45%), Positives = 56/79 (70%), Gaps = 2/79 (2%) Query: 264 TSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQS--RGFAFVECASREDAQK 321 T++K++V+N+PFQA ++E+R+LF T ++K VR+P K RGF FV+ +++DA++ Sbjct: 830 TTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKR 889 Query: 322 ILEWFGVSTHLYGRRLVIE 340 STHLYGRRLV+E Sbjct: 890 AFNALCHSTHLYGRRLVLE 908 Score = 40.0 bits (92), Expect = 0.050 Identities = 23/61 (37%), Positives = 33/61 (53%), Gaps = 4/61 (6%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQ----SRGFAFVECASREDAQKIL 323 L +KN+ F ++L+++F VK+ I K+NK S GF FVE E AQK L Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791 Query: 324 E 324 + Sbjct: 792 K 792 Score = 35.8 bits (81), Expect = 0.94 Identities = 19/60 (31%), Positives = 32/60 (52%), Gaps = 1/60 (1%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQK 321 A S +L V+N+P+ + ++L KLF + + P+ K+ +GFAF+ E A K Sbjct: 399 AESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458 Score = 33.5 bits (75), Expect = 4.7 Identities = 18/64 (28%), Positives = 32/64 (49%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEW 325 ++L+VKN+P + R+LF + + ++ + R F F+ S E+AQK + Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61 Query: 326 FGVS 329 F S Sbjct: 62 FNKS 65 >gi|7662250|ref|NP_055667.1| KIAA0682 gene product [Homo sapiens] gi|13124658|sp|Q9Y4C8|K682_HUMAN Probable RNA-binding protein KIAA0682 gi|3327178|dbj|BAA31657.1| KIAA0682 protein [Homo sapiens] Length = 960 Score = 75.1 bits (183), Expect = 1e-12 Identities = 36/79 (45%), Positives = 56/79 (70%), Gaps = 2/79 (2%) Query: 264 TSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQS--RGFAFVECASREDAQK 321 T++K++V+N+PFQA ++E+R+LF T ++K VR+P K RGF FV+ +++DA++ Sbjct: 830 TTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKR 889 Query: 322 ILEWFGVSTHLYGRRLVIE 340 STHLYGRRLV+E Sbjct: 890 AFNALCHSTHLYGRRLVLE 908 Score = 40.0 bits (92), Expect = 0.050 Identities = 23/61 (37%), Positives = 33/61 (53%), Gaps = 4/61 (6%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQ----SRGFAFVECASREDAQKIL 323 L +KN+ F ++L+++F VK+ I K+NK S GF FVE E AQK L Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791 Query: 324 E 324 + Sbjct: 792 K 792 Score = 35.8 bits (81), Expect = 0.94 Identities = 19/60 (31%), Positives = 32/60 (52%), Gaps = 1/60 (1%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQK 321 A S +L V+N+P+ + ++L KLF + + P+ K+ +GFAF+ E A K Sbjct: 399 AESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458 Score = 33.5 bits (75), Expect = 4.7 Identities = 18/64 (28%), Positives = 32/64 (49%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEW 325 ++L+VKN+P + R+LF + + ++ + R F F+ S E+AQK + Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61 Query: 326 FGVS 329 F S Sbjct: 62 FNKS 65 >gi|24661759|ref|NP_648337.1| CG3335-PA [Drosophila melanogaster] gi|7294907|gb|AAF50237.1| CG3335-PA [Drosophila melanogaster] Length = 918 Score = 74.3 bits (181), Expect = 2e-12 Identities = 36/83 (43%), Positives = 56/83 (67%), Gaps = 3/83 (3%) Query: 264 TSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQS---RGFAFVECASREDAQ 320 T TK++V+N+PFQA +E+R +F+ +++++RIP K RGF FV+ S+ +A+ Sbjct: 783 TGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDYMSKAEAK 842 Query: 321 KILEWFGVSTHLYGRRLVIEQSA 343 + + STHLYGRRLV+E SA Sbjct: 843 RAFDALSASTHLYGRRLVLEWSA 865 Score = 42.4 bits (98), Expect = 0.010 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 42/162 (25%) Query: 121 EKKTLRMAKSTERRDEKDMEYFNTLFFDFQKVLGKHNRAEVLARE--------------- 165 EKK L++ K+ ++ +NTLF LG + AE+LA++ Sbjct: 462 EKKALKLKKNAQKPIG-----WNTLF------LGANAVAEILAKQFKTSKERILDTSDGG 510 Query: 166 --AGVRVAYLEAELVNRTRTFLESNAIYLDGL---TGERSKTELIVRDFNVADLPAEC-- 218 A VR+A E ++V + FLE + LD +RS T ++ ++ A +E Sbjct: 511 SSAAVRLALGETQVVIEMKRFLEEEGVRLDAFDEPAKKRSNTVILAKNLPAATEISEITP 570 Query: 219 ---------ETKIAPSETVALLKFCSERDAMRCFKRMEKAEF 251 + PS AL+++C +A + FK++ ++F Sbjct: 571 IFSRFGPIGRIVLPPSGVTALIEYCDPLEARQAFKKLAYSKF 612 Score = 38.1 bits (87), Expect = 0.19 Identities = 69/336 (20%), Positives = 135/336 (39%), Gaps = 54/336 (16%) Query: 2 KVVMKDLPKHLDTEKFVTHLRSKHTVNAIDFLRT-RGVFRRVAFLDVPV-EQCKAFVRYH 59 ++++K LPKH+ +K ++ T+ + T G FR+ F+ E+ ++ +R+ Sbjct: 3 RIIVKQLPKHITEDKLRQIFGAQGTITDLQLKYTPDGKFRQFCFVGYSTEEEAQSAIRHF 62 Query: 60 NNSYYERVKIRCEVHRKIVFEAGCEEEALKRCGRVESIERGPRSVKVTFSKLFLDTLFDE 119 +N+ + ++R E C AL + +S + + K KL E Sbjct: 63 DNTCIQTSRVRVE---------SC--AALGSEDKPQSWSKYAKDSKKNLDKL------KE 105 Query: 120 VEKKTLRMAKSTERRDEKD-MEYFNTLFF------DFQKVLGKHNRAEVL-AREAGVRVA 171 E++ AK +E++ +KD ++ + + +FQ+ L H+++ L + G Sbjct: 106 KEREAAAKAKESEKKKKKDKVDKVDQILSRHKDDPEFQEFLEAHDKSRTLWGNDLG---- 161 Query: 172 YLEAELVNRTRTFLESNAIYLDGLTGERSKTELIVRDFNVADLPAECETKIAPSETVALL 231 +N+ R E + + R + + D + D + +T L Sbjct: 162 ------INKNRENEEEDDEEQEESRAARDDSGV---DADAGDEDGSGDEADEEEDTDKLA 212 Query: 232 -KFCSERDAMRCFKRMEKAEFLPLSTKPGKVAATSTKL-----VVKNVPFQADAQELRKL 285 K S+ + M+ E + K K A + L + NVP+ QE+ K Sbjct: 213 EKPISDLEYMKSLMATTSGE---ATAKKPKAKADKSNLELFTIKIHNVPYNTKRQEVLKF 269 Query: 286 FQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQK 321 F+ + +VR+P K GF +V + +D K Sbjct: 270 FK-PLKPYSVRLPSK----VHGFCYVGFKTEKDMAK 300 Score = 32.7 bits (73), Expect = 7.9 Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEW 325 ++++VK +P +LR++F + + +++ + + R F FV ++ E+AQ + Sbjct: 2 SRIIVKQLPKHITEDKLRQIFGAQGTITDLQLKYTPDGKFRQFCFVGYSTEEEAQSAIRH 61 Query: 326 FGVSTHLYGRRLVIEQSA 343 F +T + R+ +E A Sbjct: 62 FD-NTCIQTSRVRVESCA 78 >gi|21064855|gb|AAM29657.1| SD14970p [Drosophila melanogaster] Length = 918 Score = 74.3 bits (181), Expect = 2e-12 Identities = 36/83 (43%), Positives = 56/83 (67%), Gaps = 3/83 (3%) Query: 264 TSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQS---RGFAFVECASREDAQ 320 T TK++V+N+PFQA +E+R +F+ +++++RIP K RGF FV+ S+ +A+ Sbjct: 783 TGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDYMSKAEAK 842 Query: 321 KILEWFGVSTHLYGRRLVIEQSA 343 + + STHLYGRRLV+E SA Sbjct: 843 RAFDALSASTHLYGRRLVLEWSA 865 Score = 42.4 bits (98), Expect = 0.010 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 42/162 (25%) Query: 121 EKKTLRMAKSTERRDEKDMEYFNTLFFDFQKVLGKHNRAEVLARE--------------- 165 EKK L++ K+ ++ +NTLF LG + AE+LA++ Sbjct: 462 EKKALKLKKNAQKPIG-----WNTLF------LGANAVAEILAKQFKTSKERILDTSDGG 510 Query: 166 --AGVRVAYLEAELVNRTRTFLESNAIYLDGL---TGERSKTELIVRDFNVADLPAEC-- 218 A VR+A E ++V + FLE + LD +RS T ++ ++ A +E Sbjct: 511 SSAAVRLALGETQVVIEMKRFLEEEGVRLDAFDEPAKKRSNTVILAKNLPAATEISEITP 570 Query: 219 ---------ETKIAPSETVALLKFCSERDAMRCFKRMEKAEF 251 + PS AL+++C +A + FK++ ++F Sbjct: 571 IFSRFGPIGRIVLPPSGVTALIEYCDPLEARQAFKKLAYSKF 612 Score = 38.5 bits (88), Expect = 0.14 Identities = 69/336 (20%), Positives = 135/336 (39%), Gaps = 54/336 (16%) Query: 2 KVVMKDLPKHLDTEKFVTHLRSKHTVNAIDFLRT-RGVFRRVAFLDVPV-EQCKAFVRYH 59 ++++K LPKH+ +K ++ T+ + T G FR+ F+ E+ ++ +R+ Sbjct: 3 RIIVKQLPKHITEDKLRQIFGAQGTITDLQLKYTPDGKFRQFCFVGYSTEEEAQSAIRHF 62 Query: 60 NNSYYERVKIRCEVHRKIVFEAGCEEEALKRCGRVESIERGPRSVKVTFSKLFLDTLFDE 119 +N+ + ++R E C AL + +S + + K KL E Sbjct: 63 DNTCIQTSRVRVE---------SC--AALGSEDKPQSWSKYAKDSKKNLDKL------KE 105 Query: 120 VEKKTLRMAKSTERRDEKD-MEYFNTLFF------DFQKVLGKHNRAEVL-AREAGVRVA 171 E++ AK +E++ +KD ++ + + +FQ+ L H+++ L + G Sbjct: 106 KEREAAAKAKESEKKKKKDKVDKVDQILSRHKDDPEFQEFLEAHDKSRTLWGNDLG---- 161 Query: 172 YLEAELVNRTRTFLESNAIYLDGLTGERSKTELIVRDFNVADLPAECETKIAPSETVALL 231 +N+ R E + + R + + D + D + +T L Sbjct: 162 ------INKNREDEEEDDEQQEKSRAARDDSGV---DADAGDEDGSGDEADEEEDTDKLA 212 Query: 232 -KFCSERDAMRCFKRMEKAEFLPLSTKPGKVAATSTKL-----VVKNVPFQADAQELRKL 285 K S+ + M+ E + K K A + L + NVP+ QE+ K Sbjct: 213 EKPISDLEYMKSLMATTSGE---ATAKKPKAKADKSNLELFTIKIHNVPYNTKRQEVLKF 269 Query: 286 FQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQK 321 F+ + +VR+P K GF +V + +D K Sbjct: 270 FK-PLKPYSVRLPSK----VHGFCYVGFKTEKDMAK 300 Score = 32.7 bits (73), Expect = 7.9 Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEW 325 ++++VK +P +LR++F + + +++ + + R F FV ++ E+AQ + Sbjct: 2 SRIIVKQLPKHITEDKLRQIFGAQGTITDLQLKYTPDGKFRQFCFVGYSTEEEAQSAIRH 61 Query: 326 FGVSTHLYGRRLVIEQSA 343 F +T + R+ +E A Sbjct: 62 FD-NTCIQTSRVRVESCA 78 >gi|17542530|ref|NP_502432.1| RNA Binding Domain protein RBD-1 (98.0 kD) (rbd-1) [Caenorhabditis elegans] gi|7508323|pir||T25186 hypothetical protein T23F6.4 - Caenorhabditis elegans gi|3880097|emb|CAB05631.1| C. elegans rbd-1 protein (corresponding sequence T23F6.4) [Caenorhabditis elegans] Length = 872 Score = 73.9 bits (180), Expect = 3e-12 Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 2/77 (2%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK--RNKQSRGFAFVECASREDAQKIL 323 TKL+V+N+PF+A +E+ LF+T VK +RIP K + +Q RGF FV+ S ++A + Sbjct: 748 TKLLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADEAHRAF 807 Query: 324 EWFGVSTHLYGRRLVIE 340 + STHLYGRRLV+E Sbjct: 808 DSLVHSTHLYGRRLVLE 824 Score = 42.0 bits (97), Expect = 0.013 Identities = 26/85 (30%), Positives = 41/85 (47%), Gaps = 3/85 (3%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 +T+L+VKN+P Q+LRK F+ Q+ + + + RGFAFV A L Sbjct: 2 TTRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALA 61 Query: 325 WFGVSTHLYGRRLVIEQSAERIFGE 349 T ++L +E+ R FG+ Sbjct: 62 KSN-QTFFNSKKLTVEEC--RPFGD 83 >gi|23508862|ref|NP_701530.1| hypothetical protein [Plasmodium falciparum 3D7] gi|23496698|gb|AAN36254.1|AE014846_53 hypothetical protein [Plasmodium falciparum 3D7] Length = 1119 Score = 69.7 bits (169), Expect = 6e-11 Identities = 37/81 (45%), Positives = 54/81 (65%), Gaps = 1/81 (1%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWF 326 KLVVKN+ FQ + +ELRKLF VK+VRIP +SRG+AF+E S++++ +E Sbjct: 984 KLVVKNLAFQVNKEELRKLFSAFGNVKSVRIPKNVYNRSRGYAFIEFMSKKESCNAIESL 1043 Query: 327 GVSTHLYGRRLVIEQSAERIF 347 THLYGR L+I+ + + +F Sbjct: 1044 -QHTHLYGRHLIIDFADDFMF 1063 >gi|6325369|ref|NP_015437.1| Multiple RNA Binding Domain; essential for synthesis of the small ribosomal subunit; Mrd1p [Saccharomyces cerevisiae] gi|2132286|pir||S59777 hypothetical protein YPR112c - yeast (Saccharomyces cerevisiae) gi|914983|gb|AAB68082.1| Ypr112cp [Saccharomyces cerevisiae] Length = 887 Score = 66.2 bits (160), Expect = 6e-10 Identities = 33/80 (41%), Positives = 55/80 (68%), Gaps = 1/80 (1%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 S K++VKN+PF+A +++ +LF + Q+K+VR+P K +K +RGFAFVE ++A+ ++ Sbjct: 762 SGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMD 821 Query: 325 WFGVSTHLYGRRLVIEQSAE 344 HL GRRLV++ + E Sbjct: 822 QLH-GVHLLGRRLVMQYAEE 840 >gi|7486086|pir||T06154 hypothetical protein F24J7.162 - Arabidopsis thaliana gi|4582489|emb|CAB40378.1| putative protein [Arabidopsis thaliana] gi|7268757|emb|CAB78963.1| putative protein [Arabidopsis thaliana] Length = 772 Score = 65.5 bits (158), Expect = 1e-09 Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 14/111 (12%) Query: 230 LLKFCSERDAMRCFKRMEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTK 289 +L+FC + + + K K KP TKL VKN+ F+A +ELR+LF Sbjct: 635 ILRFCENKRSDKVGKDSNK-------DKP------CTKLHVKNIAFEATKRELRQLFSPF 681 Query: 290 AQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFGVSTHLYGRRLVIE 340 Q+K++R+P K Q G+AFVE ++++A + STH YGR LV+E Sbjct: 682 GQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKAL-ASTHFYGRHLVLE 731 >gi|22328805|ref|NP_193696.2| RRM-containing protein; protein id: At4g19610.1 [Arabidopsis thaliana] Length = 783 Score = 65.5 bits (158), Expect = 1e-09 Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 14/111 (12%) Query: 230 LLKFCSERDAMRCFKRMEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTK 289 +L+FC + + + K K KP TKL VKN+ F+A +ELR+LF Sbjct: 646 ILRFCENKRSDKVGKDSNK-------DKP------CTKLHVKNIAFEATKRELRQLFSPF 692 Query: 290 AQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFGVSTHLYGRRLVIE 340 Q+K++R+P K Q G+AFVE ++++A + STH YGR LV+E Sbjct: 693 GQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKAL-ASTHFYGRHLVLE 742 Score = 37.4 bits (85), Expect = 0.32 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 6/56 (10%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFV-----ECASR 316 +L V+N+P+ A +EL + F T ++ V + + K K+SRG A++ ECA+R Sbjct: 262 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAAR 317 >gi|23484422|gb|EAA19756.1| RNA recognition motif, putative [Plasmodium yoelii yoelii] Length = 767 Score = 63.9 bits (154), Expect = 3e-09 Identities = 34/83 (40%), Positives = 49/83 (58%), Gaps = 1/83 (1%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWF 326 KL+VKN+ FQ +EL+KLF +K VRIP +SRG+ FVE S+ + + Sbjct: 629 KLLVKNLAFQVTKEELKKLFSAFGNIKNVRIPKNAYNRSRGYGFVEFMSKNECLAAINAL 688 Query: 327 GVSTHLYGRRLVIEQSAERIFGE 349 THLYGR L+I+ + + IF + Sbjct: 689 -QHTHLYGRHLIIDFANDLIFDQ 710 >gi|19112391|ref|NP_595599.1| RNA binding protein; 5 rrm RNA recognition motifs [Schizosaccharomyces pombe] gi|2257512|dbj|BAA21408.1| hypothetical protein YPR112c [Schizosaccharomyces pombe] gi|13810221|emb|CAC37370.1| RNA-binding protein; rrm RNA recognition motif (5); possibly involved in ribosomal biogenesis; similar to S. cerevisiae MRD1 [Schizosaccharomyces pombe] Length = 833 Score = 59.3 bits (142), Expect = 8e-08 Identities = 27/78 (34%), Positives = 51/78 (64%), Gaps = 1/78 (1%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEW 325 TK+++KN+PF+A ++++ L Q+++VR+P K ++ +RGFAF E + +A + Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRA 780 Query: 326 FGVSTHLYGRRLVIEQSA 343 +THL GR LV++ ++ Sbjct: 781 L-KNTHLLGRHLVLQYAS 797 Score = 52.0 bits (123), Expect = 1e-05 Identities = 81/378 (21%), Positives = 161/378 (42%), Gaps = 63/378 (16%) Query: 2 KVVMKDLPKHLDTEKFVTHLRSKHTVNA----IDFLRTR-GVFRRVAFLDVPVEQ-CKAF 55 ++++K++P++ D EK T+L+S ++A + +T+ GV RR AF+ E+ Sbjct: 3 RIIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADKA 62 Query: 56 VRYHNNSYYERVKIRCEVHRKIVFEAGCE-------------EEALKRCGRVESI----- 97 +RY N SY E +I EVHR + + + E E L++ + E + Sbjct: 63 IRYLNKSYVETSRI--EVHRALDYRSANEKLRPYSKYASKNIELKLQKKEKEEELRNLEE 120 Query: 98 ERGPRSVKVTFSKLFLDTLFDEVEKKTLRMAKS-TERRDEKDMEYFNTLFF--------- 147 E+ + + FLDTL D ++ L+++ S + R ++ E F+T Sbjct: 121 EKAKKKKDANLKRKFLDTL-DPKAREFLKLSSSISNSRSWENEEVFDTEITNPVIPADED 179 Query: 148 -DFQKVLGKHNRAEVLAREAGVRVAYLEAELV------NRTRTFLESNAIYLDGLTGERS 200 D + L R E + ++ + L++ +V + + E + +G T + S Sbjct: 180 DDEYQDLPAAKRHEGDSIKSTEHDSTLDSGVVIDGREKSSSELHEEESEQAAEGDTAKNS 239 Query: 201 KTE----------LIVRDFNVADLPAECETKIAPSETVALLKFCSE-------RDAMRCF 243 T+ L + + + E E + E + K ++ D + Sbjct: 240 GTDAQAPLSDDEWLRLHRTRIKEKQPEEEVSVVGDELKSFDKENNDEHLERVTNDKIADA 299 Query: 244 KRMEKAEFLPLSTKPGKVAATSTK-LVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KR 301 ++KAE + + TK L ++N+ + +L+ LF Q++ V +P+ K+ Sbjct: 300 SMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKK 359 Query: 302 NKQSRGFAFVECASREDA 319 +GFA+++ +DA Sbjct: 360 TNNPKGFAYIDFHDADDA 377 Score = 35.8 bits (81), Expect = 0.94 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 266 TKLVVKNVPFQADAQEL----RKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQK 321 +++++KN+P D ++L + L Q A++ V + + SR FAF+ + EDA K Sbjct: 2 SRIIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADK 61 Query: 322 ILEWFGVS 329 + + S Sbjct: 62 AIRYLNKS 69 >gi|464252|sp|P20397|NUCL_XENLA Nucleolin (Protein C23) gi|104148|pir||S18874 nucleolin - African clawed frog gi|64937|emb|CAA44805.1| nucleolin [Xenopus laevis] Length = 651 Score = 54.3 bits (129), Expect = 3e-06 Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 18/180 (10%) Query: 180 RTRTFLESNAIYLDGLTGERSKTEL--IVRDFNVADLPAECETKIAPSETVALLKFCSER 237 +T T E +I++ L + EL +R+F + +I S+ + F SE Sbjct: 225 KTDTASEGLSIFIGNLNSTKEFDELKDALREFFSKKNLTIQDIRIGNSKKFGYVDFSSEE 284 Query: 238 DAMRCFK-----------RMEKA-EFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKL 285 + + K ++EKA F T K S L VKN+P+ +EL+++ Sbjct: 285 EVEKALKLTGKKILGTEVKIEKAMAFDKNKTAENKKERDSRTLFVKNIPYSTTVEELQEI 344 Query: 286 FQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 F+ K +RIP ++ ++G A+VE ++ ++A K LE + GR + ++ + E+ Sbjct: 345 FEN---AKDIRIPTGKDGSNKGIAYVEFSNEDEANKALE-EKQGAEIEGRSIFVDFTGEK 400 Score = 42.7 bits (99), Expect = 0.008 Identities = 34/135 (25%), Positives = 70/135 (51%), Gaps = 18/135 (13%) Query: 221 KIAPSETVALLKFCSERDAMRCFKRMEKAE------FLPLSTKPGKVAAT-------STK 267 K ++ +A ++F +E +A + + + AE F+ + + + + S Sbjct: 357 KDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKV 416 Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFG 327 LVV N+ + A LR++F+ + ++RIP + + ++GFAF+E +S EDA+ ++ Sbjct: 417 LVVNNLSYSATEDSLREVFE---KATSIRIPQNQGR-AKGFAFIEFSSAEDAKDAMDSCN 472 Query: 328 VSTHLYGRRLVIEQS 342 +T + GR + +E S Sbjct: 473 -NTEIEGRSIRLEFS 486 >gi|422617|pir||S32644 nucleolin - African clawed frog gi|295899|emb|CAA51460.1| nucleolin [Xenopus laevis] Length = 705 Score = 52.4 bits (124), Expect = 1e-05 Identities = 47/181 (25%), Positives = 80/181 (43%), Gaps = 20/181 (11%) Query: 180 RTRTFLESNAIYLDGLTGERSKTEL--IVRDFNVADLPAECETKIAPSETVALLKFCSER 237 +T T E +I++ L EL +R+F + +I S+ + F SE Sbjct: 276 KTDTASEGFSIFIGNLNSTLDFDELKDALREFFSKKNLTIQDVRIGGSKKFGYVDFSSEE 335 Query: 238 DAMRCFKRMEKAEFLPLSTKPGKVAA-------------TSTKLVVKNVPFQADAQELRK 284 + + K K + L L K K A S L VKN+P+ A+EL++ Sbjct: 336 EVEKALKLSGK-KILGLEVKIEKAVAFDKNKNAENKKERDSRTLFVKNIPYSTSAEELQE 394 Query: 285 LFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAE 344 +F+ K +RIP + ++G A+VE ++ +A K LE + GR L ++ + E Sbjct: 395 IFE---NAKDIRIPTGNDGSNKGIAYVEFSTEAEANKALE-EKQGAEIEGRSLFVDFTGE 450 Query: 345 R 345 + Sbjct: 451 K 451 Score = 44.7 bits (104), Expect = 0.002 Identities = 35/128 (27%), Positives = 68/128 (52%), Gaps = 18/128 (14%) Query: 228 VALLKFCSERDAMRCFKRMEKAE------FLPLSTKPGK-------VAATSTKLVVKNVP 274 +A ++F +E +A + + + AE F+ + + + A S LVV N+ Sbjct: 415 IAYVEFSTEAEANKALEEKQGAEIEGRSLFVDFTGEKSQNSGGRRGPAGDSKVLVVNNLS 474 Query: 275 FQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFGVSTHLYG 334 + A LR++F+ + ++RIP + + ++GFAFVE +S EDA++ ++ +T + G Sbjct: 475 YSATEDSLREVFE---KATSIRIPQNQGR-AKGFAFVEFSSMEDAKEAMDSCN-NTEVEG 529 Query: 335 RRLVIEQS 342 R + +E S Sbjct: 530 RSIRLEFS 537 >gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein cp31, putative; protein id: At5g50250.1, supported by cDNA: gi_14532487, supported by cDNA: gi_18655364 [Arabidopsis thaliana] gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana] gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana] gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana] Length = 289 Score = 52.4 bits (124), Expect = 1e-05 Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEW 325 KL V N+P+ D+Q L LF+ V+ + R+ QSRGF FV ++ E+A+K +E Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173 Query: 326 FGVSTHLYGRRLVIEQSAER 345 F S + GRRL + ++A R Sbjct: 174 FN-SFEVNGRRLTVNRAAPR 192 Score = 34.7 bits (78), Expect = 2.1 Identities = 22/87 (25%), Positives = 42/87 (47%), Gaps = 2/87 (2%) Query: 260 KVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASRED 318 +V + ++ V N+P+ D+ L +LF +V R+ R +SRGF FV+ ++ + Sbjct: 201 RVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENE 260 Query: 319 AQKILEWFGVSTHLYGRRLVIEQSAER 345 + +L GR + + + ER Sbjct: 261 VNVAIAALD-GQNLEGRAIKVNVAEER 286 >gi|128840|sp|P15771|NUCL_CHICK Nucleolin (Protein C23) gi|70845|pir||DNCHNL nucleolin - chicken gi|63711|emb|CAA35060.1| nucleolin (AA 1-694) [Gallus gallus] Length = 694 Score = 49.7 bits (117), Expect = 6e-05 Identities = 42/179 (23%), Positives = 83/179 (45%), Gaps = 18/179 (10%) Query: 180 RTRTFLESNAIYLDGLTGERSKTEL--IVRDFNVADLPAECETKIAPSETVALLKFCSER 237 +T T + ++++ LT + EL +++F E +I S+ + F S Sbjct: 273 KTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAE 332 Query: 238 DAMRCFK-----------RMEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLF 286 D + + ++EKA+ S K K + L VKN+P++ E++ +F Sbjct: 333 DMDKALQLNGKKLMGLEIKLEKAKSKE-SLKENKKERDARTLFVKNLPYRVTEDEMKNVF 391 Query: 287 QTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 + + VR+ + + S+G A++E + +A+K LE T + GR +VI+ + E+ Sbjct: 392 ENALE---VRLVLNKEGSSKGMAYIEFKTEAEAEKALE-EKQGTEVDGRAMVIDYTGEK 446 Score = 40.4 bits (93), Expect = 0.038 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 8/81 (9%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSR--GFAFVECASREDAQKI 322 S L+V N+ + A + L++LF+ KA I + +N Q R G+AFVE + EDA++ Sbjct: 460 SKTLIVNNLSYAASEETLQELFK-----KATSIKMPQNNQGRPKGYAFVEFPTAEDAKEA 514 Query: 323 LEWFGVSTHLYGRRLVIEQSA 343 L +T + GR + +E S+ Sbjct: 515 LNSCN-NTEIEGRAIRLEFSS 534 >gi|7446355|pir||S71556 DNA-binding protein CEBP-1 - clove pink gi|1054915|gb|AAA81023.1| CEBP-1 [Dianthus caryophyllus] Length = 292 Score = 48.5 bits (114), Expect = 1e-04 Identities = 29/80 (36%), Positives = 44/80 (54%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEW 325 KL V N+PF D+++L +F V+ + R +SRGF FV ++ E+A K +E Sbjct: 113 KLYVGNLPFDVDSEKLANMFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEM 172 Query: 326 FGVSTHLYGRRLVIEQSAER 345 F S L GR L + ++A R Sbjct: 173 FH-SYELNGRLLTVNKAAPR 191 >gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana] Length = 300 Score = 48.1 bits (113), Expect = 2e-04 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEW 325 KL V N+P+ D Q L +LF V+ + R QSRGF FV ++ E+A+K +E Sbjct: 122 KLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEM 181 Query: 326 FGVSTHLYGRRLVIEQSAER 345 F + GR L + ++A R Sbjct: 182 FN-RYDINGRLLTVNKAAPR 200 Score = 33.1 bits (74), Expect = 6.1 Identities = 17/63 (26%), Positives = 33/63 (51%), Gaps = 1/63 (1%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECAS 315 +P + + ++ V N+P+Q D L ++F +V R+ R +SRGF FV ++ Sbjct: 206 RPPRAFEPAFRMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMST 265 Query: 316 RED 318 + + Sbjct: 266 QTE 268 >gi|19173032|ref|NP_597583.1| NUCLEOLAR PROTEIN OF THE GAR FAMILY [Encephalitozoon cuniculi] gi|19168699|emb|CAD26218.1| NUCLEOLAR PROTEIN OF THE GAR FAMILY [Encephalitozoon cuniculi] Length = 293 Score = 48.1 bits (113), Expect = 2e-04 Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 6/99 (6%) Query: 231 LKFCSERDAMRCFKRMEKAEFLPLSTKPGKVAATSTK----LVVKNVPFQADAQELRKLF 286 ++FC E D + K ++ FL + K + V N+P++ D ++L+K F Sbjct: 133 VEFCKEEDVKKALK-LDGTVFLGREVVVNMAHPRANKERHTIYVSNIPYECDKRDLKKYF 191 Query: 287 QTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILE 324 + +V + +P R N + +G+ FV+ ++ED +++L+ Sbjct: 192 EGMGEVVGMSLPYDRDNNRLKGYGFVDFGNKEDYERVLK 230 Score = 36.2 bits (82), Expect = 0.72 Identities = 22/82 (26%), Positives = 41/82 (49%), Gaps = 3/82 (3%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRN-KQSRGFAFVECASREDAQKIL 323 S + +K + + +L+ + +V V IP+ + K+++GF +VE ED +K L Sbjct: 86 SLTVFIKGISYDLTEYDLKSEMEKIGKVARVGIPMTNDHKRNKGFGYVEFCKEEDVKKAL 145 Query: 324 EWFGVSTHLYGRRLVIEQSAER 345 + G T GR +V+ + R Sbjct: 146 KLDG--TVFLGREVVVNMAHPR 165 >gi|13812249|ref|NP_113380.1| polyadenylate binding protein [Guillardia theta] gi|25397060|pir||A99101 polyadenylate binding protein [imported] - Guillardia theta nucleomorph gi|13794561|gb|AAK39936.1|AF165818_144 polyadenylate binding protein [Guillardia theta] Length = 479 Score = 47.8 bits (112), Expect = 2e-04 Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Query: 261 VAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFV 311 +A++ KL+VKN+PF + L+++FQ +K+VRIP K N +RGF F+ Sbjct: 399 LASSKYKLLVKNIPFNISSSRLKRIFQNLPMIKSVRIP-KNNGFNRGFGFL 448 >gi|133248|sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplast precursor gi|100295|pir||S22548 ribonucleoprotein, 31K, precursor - wood tobacco gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris] gi|19756|emb|CAA37885.1| 31 kDa ribonucleoprotein precursor [Nicotiana sylvestris] Length = 315 Score = 47.4 bits (111), Expect = 3e-04 Identities = 27/80 (33%), Positives = 46/80 (56%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEW 325 KL V N+P+ D++ L +LF+ V+ + R+ QSRGF FV ++ E+A+K +E Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196 Query: 326 FGVSTHLYGRRLVIEQSAER 345 + + GR L + ++A R Sbjct: 197 YN-RYDVNGRLLTVNKAARR 215 Score = 35.8 bits (81), Expect = 0.94 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECAS 315 +P + S ++ V N+P+ D L +LF +V + R+ R +SRGF FV AS Sbjct: 221 RPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMAS 280 Query: 316 RED 318 + Sbjct: 281 EAE 283 >gi|7446359|pir||T05727 nucleic acid-binding protein - barley gi|3550483|emb|CAA11893.1| cp31BHv [Hordeum vulgare subsp. vulgare] Length = 283 Score = 47.0 bits (110), Expect = 4e-04 Identities = 27/80 (33%), Positives = 46/80 (56%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILEW 325 K+ V N+P+ D++ L +LF V+ + K + QSRGF FV ++ E+A K +E Sbjct: 106 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNKESGQSRGFGFVTMSTIEEADKAIET 165 Query: 326 FGVSTHLYGRRLVIEQSAER 345 F ++ GR L + ++A+R Sbjct: 166 FN-RYNISGRLLNVNRAAQR 184 Score = 42.4 bits (98), Expect = 0.010 Identities = 29/90 (32%), Positives = 45/90 (49%), Gaps = 2/90 (2%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECAS 315 +P + A+S + V N+P+QA+ L ++F +V I R +SRGF FV AS Sbjct: 190 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 249 Query: 316 REDAQKILEWFGVSTHLYGRRLVIEQSAER 345 +ED + + GR L + +AER Sbjct: 250 KEDLDSAISALD-GQEMDGRPLRVNVAAER 278 >gi|7446358|pir||T05725 cp31AHv protein - barley gi|3550467|emb|CAA06469.1| cp31AHv protein [Hordeum vulgare subsp. vulgare] Length = 294 Score = 47.0 bits (110), Expect = 4e-04 Identities = 29/83 (34%), Positives = 46/83 (54%), Gaps = 8/83 (9%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEW 325 K+ V N+P+ D++ L +LF+ V+ + R QSRGF FV ++ E+A+K +E Sbjct: 117 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 176 Query: 326 FGVSTHLY---GRRLVIEQSAER 345 F H Y GR L + ++A R Sbjct: 177 F----HRYDVNGRLLTVNKAAPR 195 Score = 40.8 bits (94), Expect = 0.029 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECAS 315 +P + + +S ++ V N+P+Q D L +LF +V ++ R+ +SRGF FV AS Sbjct: 201 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDAKVVYDRDTGRSRGFGFVTMAS 260 Query: 316 REDAQKILEWFGVSTHLYGRRLVIEQSAER 345 +E+ + L GR L + + ER Sbjct: 261 QEELDDAIAALD-GQSLEGRALRVNVAEER 289 >gi|7446356|pir||T06232 Ps16 protein - wheat gi|2443390|dbj|BAA22411.1| Ps16 protein [Triticum aestivum] Length = 293 Score = 47.0 bits (110), Expect = 4e-04 Identities = 29/83 (34%), Positives = 46/83 (54%), Gaps = 8/83 (9%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEW 325 K+ V N+P+ D++ L +LF+ V+ + R QSRGF FV ++ E+A+K +E Sbjct: 116 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 175 Query: 326 FGVSTHLY---GRRLVIEQSAER 345 F H Y GR L + ++A R Sbjct: 176 F----HRYDVNGRLLTVNKAAPR 194 Score = 40.0 bits (92), Expect = 0.050 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 8/93 (8%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECAS 315 +P + + +S ++ V N+P+Q D L +LF +V R+ R+ +SRGF FV AS Sbjct: 200 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 259 Query: 316 R---EDAQKILEWFGVSTHLYGRRLVIEQSAER 345 + +DA L+ L GR L + + ER Sbjct: 260 QPELDDAIAALD----GQSLEGRALRVNVAEER 288 >gi|100903|pir||S23780 nucleic acid-binding protein - maize gi|168526|gb|AAA33486.1| nucleic acid-binding protein Length = 303 Score = 47.0 bits (110), Expect = 4e-04 Identities = 29/83 (34%), Positives = 45/83 (53%), Gaps = 8/83 (9%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEW 325 K+ V N+P+ D++ L +LF V+ + R QSRGF FV ++ E+A+K +E Sbjct: 126 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEM 185 Query: 326 FGVSTHLY---GRRLVIEQSAER 345 F H Y GR L + ++A R Sbjct: 186 F----HRYDVNGRLLTVNKAAPR 204 Score = 40.0 bits (92), Expect = 0.050 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECAS 315 +P + + S ++ V N+P+Q D L +LF +V R+ R +SRGF FV AS Sbjct: 210 RPPRQSGPSLRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRETGRSRGFGFVTMAS 269 Query: 316 REDAQKILEWFGVSTHLYGRRLVIEQSAER 345 +++ + L GR L + + ER Sbjct: 270 QDELDDAIAALD-GQSLDGRALRVNVAEER 298 >gi|22328520|ref|NP_192643.2| RRM-containing protein; protein id: At4g09040.1, supported by cDNA: 105554. [Arabidopsis thaliana] Length = 304 Score = 46.2 bits (108), Expect = 7e-04 Identities = 23/77 (29%), Positives = 45/77 (57%), Gaps = 1/77 (1%) Query: 264 TSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 + T+L+ +NVP+ + +++R LF+ V + + + + +++RG F+E AS E+A L Sbjct: 92 SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 151 Query: 324 EWFGVSTHLYGRRLVIE 340 + S GRRL ++ Sbjct: 152 KSL-ESCEYEGRRLKVD 167 >gi|19074720|ref|NP_586226.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi] gi|19069362|emb|CAD25830.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi] Length = 502 Score = 45.8 bits (107), Expect = 0.001 Identities = 23/60 (38%), Positives = 33/60 (54%) Query: 260 KVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDA 319 K +AT T +KN PF A EL +L + +V ++ PVK N + +GFAF + E A Sbjct: 185 KTSATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESA 244 Score = 42.0 bits (97), Expect = 0.013 Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 176 ELVNRTRTFLESNAIYLDGLTGERSKTELIVRDFNVAD-LPAECETKIAPSETVALLKFC 234 E+ R +S IY+ L+ + ++L NV L + + P + A + F Sbjct: 2 EIDESKRASSDSLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSSFAFVTFE 61 Query: 235 SERDAMRCFKRMEKAEF----LPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKA 290 +E DA R + + E + + K + T + VKN+P ++L F Sbjct: 62 NEEDAERAIREYKHYELHNRQIRVMKKDERPPETGN-IFVKNLPEDFTGKDLDDAFSMFG 120 Query: 291 QVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFGVSTHLY--GRRLVIE 340 ++ + ++ + +S+G+ FV+ ++ A+K+++ F L G R+V+E Sbjct: 121 EIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVE 172 >gi|133246|sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco gi|19750|emb|CAA37880.1| 28 kDa ribonucleoprotein precursor [Nicotiana sylvestris] Length = 276 Score = 45.8 bits (107), Expect = 0.001 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILEW 325 KL V N+P+ D++ L +LFQ V+ + R +SRGF FV ++ E+A K +E Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157 Query: 326 FGVSTHLYGRRLVIEQSAER 345 + L GR L + ++A R Sbjct: 158 YS-QYDLNGRLLTVNKAAPR 176 >gi|15222009|ref|NP_175322.1| nucleolin, putative; protein id: At1g48920.1 [Arabidopsis thaliana] gi|25405286|pir||A96527 probable nuM1 protein [imported] - Arabidopsis thaliana gi|11094815|gb|AAG29744.1|AC084414_12 nuM1 protein, putative [Arabidopsis thaliana] Length = 557 Score = 45.4 bits (106), Expect = 0.001 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 247 EKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQS- 305 EK+ T A S L N+ F + ++ F+ +V VR R+ S Sbjct: 278 EKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSF 337 Query: 306 RGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 RGF VE AS E+AQK LE+ G L GR + ++ + ER Sbjct: 338 RGFGHVEFASSEEAQKALEFHG--RPLLGREIRLDIAQER 375 >gi|21750187|dbj|BAC03738.1| unnamed protein product [Homo sapiens] Length = 687 Score = 45.4 bits (106), Expect = 0.001 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 37/170 (21%) Query: 188 NAIYLDGLTGERSKTELIVRDFNVADLPAECE-----------------TKIAPSETVAL 230 N I L+ G+ SK E R +LP + +K S+ +A Sbjct: 351 NEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAY 410 Query: 231 LKFCSERDAMRCFKRMEKAEFLPLST-----------------KPGKVAATSTKLVVKNV 273 ++F +E DA + F+ + E S K + S LV+ N+ Sbjct: 411 IEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNL 470 Query: 274 PFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 + A + L+++F+ +K +P +N +S+G+AF+E AS EDA++ L Sbjct: 471 SYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 517 Score = 41.6 bits (96), Expect = 0.017 Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 5/89 (5%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASR 316 K K + L+ KN+P++ EL+++F+ A+++ V ++ +S+G A++E + Sbjct: 361 KDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKGIAYIEFKTE 416 Query: 317 EDAQKILEWFGVSTHLYGRRLVIEQSAER 345 DA+K E T + GR + + + E+ Sbjct: 417 ADAEKTFE-EKQGTEIDGRSISLYYTGEK 444 >gi|20862191|ref|XP_141528.1| similar to embryonic poly(A) binding protein [Xenopus laevis] [Mus musculus] Length = 579 Score = 45.4 bits (106), Expect = 0.001 Identities = 28/82 (34%), Positives = 41/82 (49%), Gaps = 5/82 (6%) Query: 243 FKRMEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRN 302 FK +K E + G A T + VKN+ D Q L+ LF +++V++ N Sbjct: 173 FKSRQKRE-----AELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSN 227 Query: 303 KQSRGFAFVECASREDAQKILE 324 QSRGF FV E+AQK ++ Sbjct: 228 GQSRGFGFVNFEKHEEAQKAVD 249 >gi|4885511|ref|NP_005372.1| nucleolin [Homo sapiens] gi|128841|sp|P19338|NUCL_HUMAN Nucleolin (Protein C23) gi|107222|pir||A35804 nucleolin - human gi|189306|gb|AAA59954.1| nucleolin Length = 707 Score = 45.4 bits (106), Expect = 0.001 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 37/170 (21%) Query: 188 NAIYLDGLTGERSKTELIVRDFNVADLPAECE-----------------TKIAPSETVAL 230 N I L+ G+ SK E R +LP + +K S+ +A Sbjct: 374 NEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAY 433 Query: 231 LKFCSERDAMRCFKRMEKAEFLPLST-----------------KPGKVAATSTKLVVKNV 273 ++F +E DA + F+ + E S K + S LV+ N+ Sbjct: 434 IEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNL 493 Query: 274 PFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 + A + L+++F+ +K +P +N +S+G+AF+E AS EDA++ L Sbjct: 494 SYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 540 Score = 41.6 bits (96), Expect = 0.017 Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 5/89 (5%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASR 316 K K + L+ KN+P++ EL+++F+ A+++ V ++ +S+G A++E + Sbjct: 384 KDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKGIAYIEFKTE 439 Query: 317 EDAQKILEWFGVSTHLYGRRLVIEQSAER 345 DA+K E T + GR + + + E+ Sbjct: 440 ADAEKTFE-EKQGTEIDGRSISLYYTGEK 467 Score = 34.3 bits (77), Expect = 2.7 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 12/148 (8%) Query: 186 ESNAIYLDGLTGERSKTELIVRDFNVADLPAECETKIAPSETVALLKFCSERDAMR---- 241 ES + L L+ ++ E + F A + + S+ A ++F S DA Sbjct: 484 ESKTLVLSNLSYSATE-ETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 542 Query: 242 CFKRMEKAEFLPLSTK-----PGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVR 296 C KR + + L + P + S L VK + + L++ F V+A Sbjct: 543 CNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARI 600 Query: 297 IPVKRNKQSRGFAFVECASREDAQKILE 324 + + S+GF FV+ S EDA++ +E Sbjct: 601 VTDRETGSSKGFGFVDFNSEEDAKEAME 628 >gi|13644124|ref|XP_010858.2| similar to Nucleolin (Protein C23) [Homo sapiens] Length = 710 Score = 45.4 bits (106), Expect = 0.001 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 37/170 (21%) Query: 188 NAIYLDGLTGERSKTELIVRDFNVADLPAECE-----------------TKIAPSETVAL 230 N I L+ G+ SK E R +LP + +K S+ +A Sbjct: 374 NEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAY 433 Query: 231 LKFCSERDAMRCFKRMEKAEFLPLST-----------------KPGKVAATSTKLVVKNV 273 ++F +E DA + F+ + E S K + S LV+ N+ Sbjct: 434 IEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNL 493 Query: 274 PFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 + A + L+++F+ +K +P +N +S+G+AF+E AS EDA++ L Sbjct: 494 SYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 540 Score = 41.6 bits (96), Expect = 0.017 Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 5/89 (5%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASR 316 K K + L+ KN+P++ EL+++F+ A+++ V ++ +S+G A++E + Sbjct: 384 KDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKGIAYIEFKTE 439 Query: 317 EDAQKILEWFGVSTHLYGRRLVIEQSAER 345 DA+K E T + GR + + + E+ Sbjct: 440 ADAEKTFE-EKQGTEIDGRSISLYYTGEK 467 >gi|1076251|pir||S50765 RNA-binding protein - common ice plant gi|388621|gb|AAA33039.1| RNA-binding protein Length = 289 Score = 45.1 bits (105), Expect = 0.002 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEW 325 KL V N+PF D+++L ++F+ V+ + R +SRGF FV ++ E+A+K +E Sbjct: 112 KLFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 171 Query: 326 FGVSTHLYGRRLVIEQSAER 345 + + GR L + ++A R Sbjct: 172 YH-KFEVNGRFLTVNKAAPR 190 Score = 37.0 bits (84), Expect = 0.42 Identities = 25/82 (30%), Positives = 41/82 (49%), Gaps = 2/82 (2%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKIL 323 S ++ V N+P+ D L ++F +V + R+ R +SRGFAFV AS + + + Sbjct: 204 SFRVYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASESEMNEAI 263 Query: 324 EWFGVSTHLYGRRLVIEQSAER 345 T L GR + + + ER Sbjct: 264 GALDGQT-LEGRAIRVNVAEER 284 >gi|23133487|gb|ZP_00115261.1| hypothetical protein [Synechococcus sp. WH 8102] Length = 131 Score = 45.1 bits (105), Expect = 0.002 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 7/79 (8%) Query: 256 TKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECA 314 T+ S + + N+ FQA+ + L LF +VK +P+ R + RGFAFVE Sbjct: 26 TRAHPTVPRSMTIYIGNLSFQAEQEHLFDLFSEYGEVKNCSLPLDRETGRKRGFAFVEMV 85 Query: 315 SREDAQKIL------EWFG 327 + ED QK + EW G Sbjct: 86 NDEDEQKAIDDLQEVEWMG 104 >gi|12018306|ref|NP_072143.1| nucleolin-related protein NRP [Rattus norvegicus] gi|5929884|gb|AAD56625.1|AF151373_1 nucleolin-related protein NRP [Rattus norvegicus] Length = 715 Score = 45.1 bits (105), Expect = 0.002 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 20/121 (16%) Query: 220 TKIAPSETVALLKFCSERDAMRCFKRMEKAEFLPLST-----------------KPGKVA 262 +K S+ +A ++F +E DA + F+ + E S K + Sbjct: 428 SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWS 487 Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKI 322 S LV+ N+ + A + L+++F+ +K +P +N +S+G+AF+E AS EDA++ Sbjct: 488 GESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEA 544 Query: 323 L 323 L Sbjct: 545 L 545 Score = 39.7 bits (91), Expect = 0.065 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 5/89 (5%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASR 316 K K + L+ KN+P++ EL+++F+ +++ V ++ +S+G A++E + Sbjct: 389 KDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRL----VSKDGKSKGIAYIEFKTE 444 Query: 317 EDAQKILEWFGVSTHLYGRRLVIEQSAER 345 DA+K E T + GR + + + E+ Sbjct: 445 ADAEKTFE-EKQGTEIDGRSISLYYTGEK 472 Score = 33.1 bits (74), Expect = 6.1 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 12/148 (8%) Query: 186 ESNAIYLDGLTGERSKTELIVRDFNVADLPAECETKIAPSETVALLKFCSERDAMR---- 241 ES + L L+ ++ E + F A + + S+ A ++F S DA Sbjct: 489 ESKTLVLSNLSYSATE-ETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 547 Query: 242 CFKRMEKAEFLPLSTK-----PGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVR 296 C KR + + L + P + S L VK + + LR+ F V+A Sbjct: 548 CNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLRESFD--GSVRARI 605 Query: 297 IPVKRNKQSRGFAFVECASREDAQKILE 324 + + S+GF FV+ S EDA+ E Sbjct: 606 VTDRETGSSKGFGFVDFNSEEDAKAAKE 633 >gi|26386129|dbj|BAB31653.2| unnamed protein product [Mus musculus] Length = 242 Score = 44.7 bits (104), Expect = 0.002 Identities = 25/84 (29%), Positives = 45/84 (52%), Gaps = 1/84 (1%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASR 316 K KVA +L+++N+ F+ +L+ +F V V IP K + + RGFAFV+ + Sbjct: 105 KKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNL 164 Query: 317 EDAQKILEWFGVSTHLYGRRLVIE 340 +A K L+ + + GR + ++ Sbjct: 165 LEAGKALKGANMK-EIKGRTVAVD 187 >gi|24662654|ref|NP_648461.1| CG11726-PA [Drosophila melanogaster] gi|7294733|gb|AAF50069.1| CG11726-PA [Drosophila melanogaster] Length = 291 Score = 44.7 bits (104), Expect = 0.002 Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 2/56 (3%) Query: 269 VVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 +V N+P + ELRK+F T ++++ IP K+ K+ +GFA+VE SRED ++L+ Sbjct: 88 LVSNLPMECTEGELRKVF-TSFSIRSLTIP-KKGKRPKGFAYVEMDSREDLVRLLK 141 >gi|26252146|gb|AAH40811.1| Similar to hypothetical protein FLJ10377 [Mus musculus] Length = 750 Score = 44.7 bits (104), Expect = 0.002 Identities = 25/84 (29%), Positives = 45/84 (52%), Gaps = 1/84 (1%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASR 316 K KVA +L+++N+ F+ +L+ +F V V IP K + + RGFAFV+ + Sbjct: 105 KKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNL 164 Query: 317 EDAQKILEWFGVSTHLYGRRLVIE 340 +A K L+ + + GR + ++ Sbjct: 165 LEAGKALKGANMK-EIKGRTVAVD 187 Score = 36.2 bits (82), Expect = 0.72 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLF-QTKAQVKAVRIPV------------KRNK 303 K + + T+L + N P D ++LRKL + K VRI K Sbjct: 468 KNQNIFVSQTRLCLHNFPKAVDDKQLRKLLLEATRGEKGVRIKECRVMRDLKGVHGKMKG 527 Query: 304 QSRGFAFVECASREDAQKILEWFGVSTHLYG--RRLVIEQSAE 344 QS G+AF E E A + L F + ++G +R ++E S E Sbjct: 528 QSLGYAFAEFQKHEHALRALRHFNNNPEIFGSQKRPIVEFSLE 570 Score = 35.0 bits (79), Expect = 1.6 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 12/110 (10%) Query: 247 EKAEFLPLSTK-----PGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR 301 ++ E +P+S K P V T + ++N+ F ++ + L ++ Q +K VR+ + Sbjct: 302 QEDEDVPVSEKKKRKLPSDVTEGKT-VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP 360 Query: 302 NKQ-SRGFAFVECASREDAQKIL-----EWFGVSTHLYGRRLVIEQSAER 345 + + S+G AF + ++E AQK L E G L GR+L ++ + R Sbjct: 361 DTEHSKGCAFAQFMTQEAAQKCLAAASPEAEGGGLKLDGRQLKVDLAVTR 410 >gi|12850171|dbj|BAB28620.1| unnamed protein product [Mus musculus] Length = 233 Score = 44.7 bits (104), Expect = 0.002 Identities = 25/84 (29%), Positives = 45/84 (52%), Gaps = 1/84 (1%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASR 316 K KVA +L+++N+ F+ +L+ +F V V IP K + + RGFAFV+ + Sbjct: 105 KKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNL 164 Query: 317 EDAQKILEWFGVSTHLYGRRLVIE 340 +A K L+ + + GR + ++ Sbjct: 165 LEAGKALKGANMK-EIKGRTVAVD 187 >gi|12803083|gb|AAH02343.1|AAH02343 Similar to nucleolin [Homo sapiens] gi|13676324|gb|AAH06494.1|AAH06494 Unknown (protein for MGC:1440) [Homo sapiens] gi|13676364|gb|AAH06516.1|AAH06516 Unknown (protein for MGC:3588) [Homo sapiens] Length = 482 Score = 44.3 bits (103), Expect = 0.003 Identities = 31/116 (26%), Positives = 57/116 (48%), Gaps = 20/116 (17%) Query: 225 SETVALLKFCSERDAMRCFKRMEKAEFLPLST-----------------KPGKVAATSTK 267 S+ +A ++F +E DA + F+ + E S K + S Sbjct: 200 SKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKT 259 Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 LV+ N+ + A + L+++F+ +K +P +N +S+G+AF+E AS EDA++ L Sbjct: 260 LVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 312 >gi|24214620|ref|NP_712101.1| RNA-binding protein [Leptospira interrogans serovar lai str. 56601] gi|24195595|gb|AAN49119.1|AE011365_5 RNA-binding protein [Leptospira interrogans serovar lai str. 56601] Length = 91 Score = 44.3 bits (103), Expect = 0.003 Identities = 24/76 (31%), Positives = 45/76 (58%), Gaps = 2/76 (2%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILEWF 326 + + N+ +QA +LRK F++ +V +VRI K + +SRG AFVE A++E+ ++ Sbjct: 3 IYIGNLAYQATEDDLRKAFESFGEVTSVRIITDKLSGKSRGLAFVEMANKEEGNAAIDGL 62 Query: 327 GVSTHLYGRRLVIEQS 342 T + GR + + ++ Sbjct: 63 N-GTQIRGREIKVNEA 77 >gi|17026050|dbj|BAB72085.1| hypothetical protein [Macaca fascicularis] Length = 218 Score = 43.9 bits (102), Expect = 0.003 Identities = 22/58 (37%), Positives = 34/58 (57%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 ++ V + F+ + +LRK F VK V+I R S+G+ FV ++EDAQKIL+ Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQ 91 >gi|15221187|ref|NP_177563.1| glycine-rich RNA-binding protein; protein id: At1g74230.1 [Arabidopsis thaliana] gi|25294324|pir||F96770 protein RNA-binding protein F1O17.10 [imported] - Arabidopsis thaliana gi|12324900|gb|AAG52402.1|AC020579_4 putative RNA-binding protein; 37609-36098 [Arabidopsis thaliana] gi|25083154|gb|AAN72048.1| putative RNA-binding protein [Arabidopsis thaliana] Length = 289 Score = 43.9 bits (102), Expect = 0.003 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Query: 264 TSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKI 322 +S+K+ V + + D LR+ F +V +I V R +SRGFAFV S E+A Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA 91 Query: 323 LEWFGVSTHLYGRRLVIEQSAER 345 ++ G H GRR+ + + ER Sbjct: 92 MQLDGQDLH--GRRIRVNYATER 112 >gi|21752331|dbj|BAC04171.1| unnamed protein product [Homo sapiens] Length = 339 Score = 43.9 bits (102), Expect = 0.003 Identities = 22/58 (37%), Positives = 34/58 (57%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 ++ V + F+ + +LRK F VK V+I R S+G+ FV ++EDAQKIL+ Sbjct: 40 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQ 97 >gi|14719414|ref|NP_149019.1| boule [Homo sapiens] gi|14279684|gb|AAK58689.1| BOULE [Homo sapiens] gi|16554131|dbj|BAB71664.1| unnamed protein product [Homo sapiens] gi|21707064|gb|AAH33674.1| bol, boule-like (Drosophila) [Homo sapiens] Length = 283 Score = 43.9 bits (102), Expect = 0.003 Identities = 22/58 (37%), Positives = 34/58 (57%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 ++ V + F+ + +LRK F VK V+I R S+G+ FV ++EDAQKIL+ Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQ 91 >gi|15233670|ref|NP_192644.1| putative protein [Arabidopsis thaliana] gi|25407474|pir||E85091 hypothetical protein AT4g09050 [imported] - Arabidopsis thaliana gi|7267548|emb|CAB78029.1| putative protein [Arabidopsis thaliana] Length = 211 Score = 43.9 bits (102), Expect = 0.003 Identities = 18/61 (29%), Positives = 38/61 (61%) Query: 264 TSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 + T+L+ +NVP+ + +++R LF+ V + + + + +++RG F+E AS E+A L Sbjct: 92 SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 151 Query: 324 E 324 + Sbjct: 152 K 152 >gi|15530220|gb|AAH13889.1|AAH13889 Unknown (protein for MGC:11192) [Homo sapiens] Length = 759 Score = 43.5 bits (101), Expect = 0.004 Identities = 24/84 (28%), Positives = 44/84 (51%), Gaps = 1/84 (1%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASR 316 K KVA +L+++N+ F+ +L+ +F V V IP K + + RGF FV+ + Sbjct: 105 KKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNL 164 Query: 317 EDAQKILEWFGVSTHLYGRRLVIE 340 +A K L+ + + GR + ++ Sbjct: 165 LEAGKALKGMNMK-EIKGRTVAVD 187 Score = 37.0 bits (84), Expect = 0.42 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 7/78 (8%) Query: 247 EKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRN-KQS 305 +K LP GK + ++N+ F ++ +EL +L Q ++K VRI + + + S Sbjct: 322 KKKRKLPSDVNEGKT------VFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHS 375 Query: 306 RGFAFVECASREDAQKIL 323 +G AF + ++E AQK L Sbjct: 376 KGCAFAQFMTQEAAQKCL 393 Score = 35.0 bits (79), Expect = 1.6 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQ-VKAVRIPVKR------------NK 303 K + + T+L + N+P D ++LRKL + K VRI R Sbjct: 478 KDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSATSGEKGVRIKECRVMRDLKGVHGNMKG 537 Query: 304 QSRGFAFVECASREDAQKILEWFGVSTHLYG--RRLVIEQSAE 344 QS G+AF E E A K L + ++G +R ++E S E Sbjct: 538 QSLGYAFAEFQEHEHALKALRLINNNPEIFGPLKRPIVEFSLE 580 >gi|12854741|dbj|BAB30121.1| unnamed protein product [Mus musculus] Length = 132 Score = 43.5 bits (101), Expect = 0.004 Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 ++ V + F+ + +LRK F VK V+I R S+G+ F+ ++EDAQKIL+ Sbjct: 46 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQ 103 >gi|99565|pir||S15348 RNA-binding protein, 28K - spinach Length = 233 Score = 43.5 bits (101), Expect = 0.004 Identities = 25/80 (31%), Positives = 44/80 (54%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEW 325 KL V N+P+ D+++L +F V+ + R +SRGF FV ++ E+A+K +E Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 326 FGVSTHLYGRRLVIEQSAER 345 + GR+L + ++A R Sbjct: 116 LN-GYDMDGRQLTVNKAAPR 134 Score = 36.2 bits (82), Expect = 0.72 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKIL 323 S ++ V N+P+ D L +LF +V + R+ R +SRGF FV +S + + Sbjct: 148 SCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAI 207 Query: 324 EWFGVSTHLYGRRLVIEQSAER 345 T L GR + + + ER Sbjct: 208 AALDGQT-LDGRAVRVNVAEER 228 >gi|8922388|ref|NP_060547.1| hypothetical protein FLJ10377 [Homo sapiens] gi|7022371|dbj|BAA91575.1| unnamed protein product [Homo sapiens] Length = 759 Score = 43.5 bits (101), Expect = 0.004 Identities = 24/84 (28%), Positives = 44/84 (51%), Gaps = 1/84 (1%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASR 316 K KVA +L+++N+ F+ +L+ +F V V IP K + + RGF FV+ + Sbjct: 105 KKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNL 164 Query: 317 EDAQKILEWFGVSTHLYGRRLVIE 340 +A K L+ + + GR + ++ Sbjct: 165 LEAGKALKGMNMK-EIKGRTVAVD 187 Score = 37.0 bits (84), Expect = 0.42 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 7/78 (8%) Query: 247 EKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRN-KQS 305 +K LP GK + ++N+ F ++ +EL +L Q ++K VRI + + + S Sbjct: 322 KKKRKLPSDVNEGKT------VFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHS 375 Query: 306 RGFAFVECASREDAQKIL 323 +G AF + ++E AQK L Sbjct: 376 KGCAFAQFMTQEAAQKCL 393 Score = 35.0 bits (79), Expect = 1.6 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQ-VKAVRIPVKR------------NK 303 K + + T+L + N+P D ++LRKL + K VRI R Sbjct: 478 KDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSATSGEKGVRIKECRVMRDLKGVHGNMKG 537 Query: 304 QSRGFAFVECASREDAQKILEWFGVSTHLYG--RRLVIEQSAE 344 QS G+AF E E A K L + ++G +R ++E S E Sbjct: 538 QSLGYAFAEFQEHEHALKALRLINNNPEIFGPLKRPIVEFSLE 580 >gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea] Length = 226 Score = 43.5 bits (101), Expect = 0.004 Identities = 25/80 (31%), Positives = 44/80 (54%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEW 325 KL V N+P+ D+++L +F V+ + R +SRGF FV ++ E+A+K +E Sbjct: 49 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 108 Query: 326 FGVSTHLYGRRLVIEQSAER 345 + GR+L + ++A R Sbjct: 109 LN-GYDMDGRQLTVNKAAPR 127 Score = 36.2 bits (82), Expect = 0.72 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKIL 323 S ++ V N+P+ D L +LF +V + R+ R +SRGF FV +S + + Sbjct: 141 SCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAI 200 Query: 324 EWFGVSTHLYGRRLVIEQSAER 345 T L GR + + + ER Sbjct: 201 AALDGQT-LDGRAVRVNVAEER 221 >gi|19032262|emb|CAD18922.1| RNA-binding protein precursor [Persea americana] Length = 315 Score = 43.5 bits (101), Expect = 0.004 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEW 325 K+ V N+PF ++ +L LF V++ + R QSRGF FV ++ E+ K +E Sbjct: 137 KIFVGNLPFDLESADLADLFNKAGVVESAEVIYNRETDQSRGFGFVSMSTVEEVVKAIEM 196 Query: 326 FGVSTHLYGRRLVIEQSAER 345 F + GR L + ++A R Sbjct: 197 FD-RYDINGRTLTVNKAAPR 215 Score = 39.3 bits (90), Expect = 0.085 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 8/93 (8%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECAS 315 +P + + ++ V N+P+Q D L +LF +V+ RI R +SRGF FV +S Sbjct: 221 RPPRDFEPAFRVYVGNIPWQVDNLRLEQLFSEYGKVEEARIVFDRETGRSRGFGFVTMSS 280 Query: 316 R---EDAQKILEWFGVSTHLYGRRLVIEQSAER 345 + EDA L+ + L GR + + + ER Sbjct: 281 QIEMEDAIAALD----GSDLDGRAIKVSMAQER 309 >gi|23131628|gb|ZP_00113413.1| hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 155 Score = 43.5 bits (101), Expect = 0.004 Identities = 24/67 (35%), Positives = 36/67 (52%), Gaps = 7/67 (10%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKIL--- 323 + + N+ FQA+ ++L LF +VK +P+ R + RGFAFVE + D QK + Sbjct: 47 IYIGNLSFQAEQEDLLDLFSQYGEVKTCSLPLDRETGRKRGFAFVEMTNDADEQKAIDDL 106 Query: 324 ---EWFG 327 EW G Sbjct: 107 QDVEWMG 113 >gi|20847035|ref|XP_129821.1| RIKEN cDNA 4930597B14 [Mus musculus] Length = 195 Score = 43.5 bits (101), Expect = 0.004 Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 ++ V + F+ + +LRK F VK V+I R S+G+ F+ ++EDAQKIL+ Sbjct: 109 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQ 166 >gi|15228279|ref|NP_187651.1| hypothetical protein; protein id: At3g10400.1 [Arabidopsis thaliana] gi|12322795|gb|AAG51392.1|AC011560_24 hypothetical protein; 114721-113936 [Arabidopsis thaliana] Length = 261 Score = 43.5 bits (101), Expect = 0.004 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRN-KQSRGFAFVECASRE 317 G +A + + L V N+ F ++ LF T +V V + R+ +QSRG AFV SRE Sbjct: 50 GGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSRE 109 Query: 318 DAQKILEWFGVSTHLYGRRLVIEQSAE 344 DA K L GR+L + +A+ Sbjct: 110 DAAKAARSMDAKI-LNGRKLTVSIAAD 135 >gi|14578838|gb|AAK69026.1| boule [Mus musculus] Length = 297 Score = 43.5 bits (101), Expect = 0.004 Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 ++ V + F+ + +LRK F VK V+I R S+G+ F+ ++EDAQKIL+ Sbjct: 50 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQ 107 >gi|133247|sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplast (28RNP) Length = 233 Score = 43.5 bits (101), Expect = 0.004 Identities = 25/80 (31%), Positives = 44/80 (54%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEW 325 KL V N+P+ D+++L +F V+ + R +SRGF FV ++ E+A+K +E Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 326 FGVSTHLYGRRLVIEQSAER 345 + GR+L + ++A R Sbjct: 116 LN-GYDMDGRQLTVNKAAPR 134 Score = 36.2 bits (82), Expect = 0.72 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKIL 323 S ++ V N+P+ D L +LF +V + R+ R +SRGF FV +S + + Sbjct: 148 SCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAI 207 Query: 324 EWFGVSTHLYGRRLVIEQSAER 345 T L GR + + + ER Sbjct: 208 AALDGQT-LDGRAVRVNVAEER 228 >gi|21302834|gb|EAA14979.1| agCP4665 [Anopheles gambiae str. PEST] Length = 247 Score = 43.1 bits (100), Expect = 0.006 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 5/75 (6%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFG 327 L+VKNV F +E+ + F +VK VRIP R S GFAFVE + + QK G Sbjct: 129 LLVKNVNFSTAKEEIAEHFDQAGRVKGVRIPKHR---SSGFAFVEMQNADGFQKAFLLDG 185 Query: 328 VSTHLYGRRLVIEQS 342 ++L GR++ + S Sbjct: 186 --SYLDGRKISVNLS 198 >gi|15218972|ref|NP_176208.1| chloroplast RNA-binding protein, putative; protein id: At1g60000.1, supported by cDNA: 41722., supported by cDNA: gi_13194797 [Arabidopsis thaliana] gi|25386566|pir||C96624 hypothetical protein T2K10.5 [imported] - Arabidopsis thaliana gi|4249379|gb|AAD14476.1|AAD14476 Strong similarity to gb|X82030 chloroplast RNA binding protein (RNP1) from Phaseolus vulgaris. [Arabidopsis thaliana] gi|13194798|gb|AAK15561.1|AF348590_1 putative nucleic acid-binding protein [Arabidopsis thaliana] gi|21593720|gb|AAM65687.1| nucleic acid-binding protein, putative [Arabidopsis thaliana] Length = 258 Score = 43.1 bits (100), Expect = 0.006 Identities = 28/79 (35%), Positives = 42/79 (52%), Gaps = 2/79 (2%) Query: 262 AATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQ 320 AA +TKL N+P+ D+ L ++ Q A + V + R+ QSRGFAFV ++ ED Sbjct: 81 AAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCN 140 Query: 321 KILEWFGVSTHLYGRRLVI 339 I++ T GR L + Sbjct: 141 IIIDNLD-GTEYLGRALKV 158 >gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana] Length = 613 Score = 42.7 bits (99), Expect = 0.008 Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 13/104 (12%) Query: 231 LKFCSERDAMRCFKRMEKAEFLPLSTKPGKVAAT----------STKLVVKNVPFQADAQ 280 + F + +DA R + + ++PL KP +V + + + +KN+ D + Sbjct: 66 VNFTNPQDAARAIQELN---YIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHK 122 Query: 281 ELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 L F + + + ++ V + QS+G+ FV+ A+ E AQK +E Sbjct: 123 ALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIE 166 >gi|15235241|ref|NP_195137.1| polyadenylate-binding protein 2 (PABP2); protein id: At4g34110.1 [Arabidopsis thaliana] gi|1171978|sp|P42731|PAB2_ARATH Polyadenylate-binding protein 2 (Poly(A) binding protein 2) (PABP 2) gi|7439968|pir||T05425 polyadenylate-binding protein F28A23.130 - Arabidopsis thaliana gi|304109|gb|AAA61780.1| poly(A)-binding protein gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana] gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana] gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis thaliana] Length = 629 Score = 42.7 bits (99), Expect = 0.008 Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 13/104 (12%) Query: 231 LKFCSERDAMRCFKRMEKAEFLPLSTKPGKVAAT----------STKLVVKNVPFQADAQ 280 + F + +DA R + + ++PL KP +V + + + +KN+ D + Sbjct: 82 VNFTNPQDAARAIQELN---YIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHK 138 Query: 281 ELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 L F + + + ++ V + QS+G+ FV+ A+ E AQK +E Sbjct: 139 ALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIE 182 >gi|629557|pir||S49030 RNA-binding protein RNP-D precursor - Arabidopsis thaliana (fragment) gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana] Length = 310 Score = 42.4 bits (98), Expect = 0.010 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%) Query: 247 EKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QS 305 E+AEF +P + A KL V N+ + ++Q L LF+ V+ + R QS Sbjct: 120 ERAEF----PEPSEEA----KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQS 171 Query: 306 RGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 RGF FV +S ++A+ +E F L GR L + ++A R Sbjct: 172 RGFGFVTMSSVDEAETAVEKFN-RYDLNGRLLTVNKAAPR 210 >gi|387050|gb|AAA36966.1| nucleolin, C23 Length = 679 Score = 42.4 bits (98), Expect = 0.010 Identities = 31/115 (26%), Positives = 56/115 (47%), Gaps = 19/115 (16%) Query: 225 SETVALLKFCSERDAMRCFKRMEKAEFLPLST----------------KPGKVAATSTKL 268 S+ +A ++F SE DA + + + AE S K + S L Sbjct: 394 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTL 453 Query: 269 VVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 V+ N+ + A + L+++F+ +K +P + +S+G+AF+E AS EDA++ L Sbjct: 454 VLSNLSYSATEETLQEVFEKATFIK---VPQNQQGKSKGYAFIEFASFEDAKEAL 505 Score = 38.5 bits (88), Expect = 0.14 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 16/145 (11%) Query: 190 IYLDGLTGERSKTELIV--------RDFNVADLPAECETKIA--PSETVALLKFCSERDA 239 +++ L +S EL V D V D+ K E+ L+ E Sbjct: 275 LFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTG 334 Query: 240 MRCFKRMEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV 299 ++ F K E P KV A T L+ KN+ F EL+++F+ +++ V Sbjct: 335 LKVFGNEIKLE-KPKGRDSKKVRAART-LLAKNLSFNITEDELKEVFEDALEIRLV---- 388 Query: 300 KRNKQSRGFAFVECASREDAQKILE 324 ++ +S+G A++E S DA+K LE Sbjct: 389 SQDGKSKGIAYIEFKSEADAEKNLE 413 >gi|15233980|ref|NP_194208.1| 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp31); protein id: At4g24770.1, supported by cDNA: gi_15294253, supported by cDNA: gi_387568 [Arabidopsis thaliana] gi|464662|sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) gi|282884|pir||S28057 RNA-binding protein RNP-T precursor - Arabidopsis thaliana gi|16490|emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana] gi|387569|gb|AAA32860.1| 31 kDa RNA binding protein gi|475718|gb|AAA18378.1| RNA-binding protein 1 gi|4220513|emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana] gi|7269328|emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana] gi|737169|prf||1921382A RNA-binding protein Length = 329 Score = 42.4 bits (98), Expect = 0.010 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%) Query: 247 EKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QS 305 E+AEF +P + A KL V N+ + ++Q L LF+ V+ + R QS Sbjct: 139 ERAEF----PEPSEEA----KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQS 190 Query: 306 RGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 RGF FV +S ++A+ +E F L GR L + ++A R Sbjct: 191 RGFGFVTMSSVDEAETAVEKFN-RYDLNGRLLTVNKAAPR 229 >gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis thaliana] gi|23505889|gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana] Length = 329 Score = 42.4 bits (98), Expect = 0.010 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%) Query: 247 EKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QS 305 E+AEF +P + A KL V N+ + ++Q L LF+ V+ + R QS Sbjct: 139 ERAEF----PEPSEEA----KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQS 190 Query: 306 RGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 RGF FV +S ++A+ +E F L GR L + ++A R Sbjct: 191 RGFGFVTMSSVDEAETAVEKFN-RYDLNGRLLTVNKAAPR 229 >gi|681908|dbj|BAA06521.1| cp31 [Arabidopsis thaliana] Length = 304 Score = 42.4 bits (98), Expect = 0.010 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%) Query: 247 EKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QS 305 E+AEF +P + A KL V N+ + ++Q L LF+ V+ + R QS Sbjct: 114 ERAEF----PEPSEEA----KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQS 165 Query: 306 RGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 RGF FV +S ++A+ +E F L GR L + ++A R Sbjct: 166 RGFGFVTMSSVDEAETAVEKFN-RYDLNGRLLTVNKAAPR 204 >gi|90209|pir||A27441 nucleolin - Chinese hamster Length = 713 Score = 42.4 bits (98), Expect = 0.010 Identities = 31/115 (26%), Positives = 56/115 (47%), Gaps = 19/115 (16%) Query: 225 SETVALLKFCSERDAMRCFKRMEKAEFLPLST----------------KPGKVAATSTKL 268 S+ +A ++F SE DA + + + AE S K + S L Sbjct: 428 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTL 487 Query: 269 VVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 V+ N+ + A + L+++F+ +K +P + +S+G+AF+E AS EDA++ L Sbjct: 488 VLSNLSYSATEETLQEVFEKATFIK---VPQNQQGKSKGYAFIEFASFEDAKEAL 539 Score = 38.5 bits (88), Expect = 0.14 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 16/145 (11%) Query: 190 IYLDGLTGERSKTELIV--------RDFNVADLPAECETKIA--PSETVALLKFCSERDA 239 +++ L +S EL V D V D+ K E+ L+ E Sbjct: 309 LFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTG 368 Query: 240 MRCFKRMEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV 299 ++ F K E P KV A T L+ KN+ F EL+++F+ +++ V Sbjct: 369 LKVFGNEIKLE-KPKGRDSKKVRAART-LLAKNLSFNITEDELKEVFEDALEIRLV---- 422 Query: 300 KRNKQSRGFAFVECASREDAQKILE 324 ++ +S+G A++E S DA+K LE Sbjct: 423 SQDGKSKGIAYIEFKSEADAEKNLE 447 >gi|1076305|pir||S53492 RNA-binding protein cp31 precursor - Arabidopsis thaliana gi|681906|dbj|BAA06520.1| cp31 [Arabidopsis thaliana] Length = 314 Score = 42.4 bits (98), Expect = 0.010 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%) Query: 247 EKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QS 305 E+AEF +P + A KL V N+ + ++Q L LF+ V+ + R QS Sbjct: 124 ERAEF----PEPSEEA----KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQS 175 Query: 306 RGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 RGF FV +S ++A+ +E F L GR L + ++A R Sbjct: 176 RGFGFVTMSSVDEAETAVEKFN-RYDLNGRLLTVNKAAPR 214 >gi|128842|sp|P08199|NUCL_MESAU Nucleolin (Protein C23) Length = 714 Score = 42.4 bits (98), Expect = 0.010 Identities = 31/115 (26%), Positives = 56/115 (47%), Gaps = 19/115 (16%) Query: 225 SETVALLKFCSERDAMRCFKRMEKAEFLPLST----------------KPGKVAATSTKL 268 S+ +A ++F SE DA + + + AE S K + S L Sbjct: 429 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTL 488 Query: 269 VVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 V+ N+ + A + L+++F+ +K +P + +S+G+AF+E AS EDA++ L Sbjct: 489 VLSNLSYSATEETLQEVFEKATFIK---VPQNQQGKSKGYAFIEFASFEDAKEAL 540 Score = 38.5 bits (88), Expect = 0.14 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 16/145 (11%) Query: 190 IYLDGLTGERSKTELIV--------RDFNVADLPAECETKIA--PSETVALLKFCSERDA 239 +++ L +S EL V D V D+ K E+ L+ E Sbjct: 310 LFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTG 369 Query: 240 MRCFKRMEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV 299 ++ F K E P KV A T L+ KN+ F EL+++F+ +++ V Sbjct: 370 LKVFGNEIKLE-KPKGRDSKKVRAART-LLAKNLSFNITEDELKEVFEDALEIRLV---- 423 Query: 300 KRNKQSRGFAFVECASREDAQKILE 324 ++ +S+G A++E S DA+K LE Sbjct: 424 SQDGKSKGIAYIEFKSEADAEKNLE 448 >gi|99684|pir||S20940 DNA-binding protein - Arabidopsis thaliana Length = 246 Score = 42.4 bits (98), Expect = 0.010 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%) Query: 247 EKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QS 305 E+AEF +P + A KL V N+ + ++Q L LF+ V+ + R QS Sbjct: 56 ERAEF----PEPSEEA----KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQS 107 Query: 306 RGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 RGF FV +S ++A+ +E F L GR L + ++A R Sbjct: 108 RGFGFVTMSSVDEAETAVEKFN-RYDLNGRLLTVNKAAPR 146 >gi|7489207|pir||T03986 transformer-SR ribonucleoprotein - common tobacco (fragment) gi|1781299|emb|CAA70700.1| transformer-SR ribonucleoprotein [Nicotiana tabacum] Length = 235 Score = 42.4 bits (98), Expect = 0.010 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 2/88 (2%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK-RNKQSRGFAFVECASRE 317 G+V+ L V + + ++L + F + +VK+V + V+ R++ SRGFAF+ S E Sbjct: 59 GEVSNPGNTLYVTGLSTRVTERDLEEHFSKEGKVKSVFLVVEPRSRISRGFAFITMDSLE 118 Query: 318 DAQKILEWFGVSTHLYGRRLVIEQSAER 345 DA + ++ S L GR + +E+S + Sbjct: 119 DANRCIKHLNQSV-LEGRYITVEKSRRK 145 >gi|475719|gb|AAA18379.1| RNA-binding protein 2 Length = 315 Score = 42.4 bits (98), Expect = 0.010 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%) Query: 247 EKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QS 305 E+AEF +P + A KL V N+ + ++Q L LF+ V+ + R QS Sbjct: 125 ERAEF----PEPSEEA----KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQS 176 Query: 306 RGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 RGF FV +S ++A+ +E F L GR L + ++A R Sbjct: 177 RGFGFVTMSSVDEAETAVEKFN-RYDLNGRLLTVNKAAPR 215 >gi|21295463|gb|EAA07608.1| agCP1371 [Anopheles gambiae str. PEST] Length = 826 Score = 42.4 bits (98), Expect = 0.010 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 255 STKPGKVAATST----KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAF 310 +T+P + +S+ KL +K +PF +ELR+LF+ +K +RI R+ +S+G A+ Sbjct: 660 TTRPHQFKYSSSFEPNKLFIKGLPFNLGQEELRRLFEPFGSIKDIRIVCFRSGKSKGLAY 719 Query: 311 VECASREDAQ 320 +E + A+ Sbjct: 720 LEYETETSAK 729 >gi|18399701|ref|NP_565513.1| RRM-containing protein; protein id: At2g21440.1, supported by cDNA: gi_16604630 [Arabidopsis thaliana] gi|25412039|pir||C84601 hypothetical protein At2g21440 [imported] - Arabidopsis thaliana gi|4567275|gb|AAD23688.1| expressed protein [Arabidopsis thaliana] gi|16604631|gb|AAL24108.1| unknown protein [Arabidopsis thaliana] Length = 1003 Score = 42.4 bits (98), Expect = 0.010 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK-RNKQSRGFAFVECASREDAQK 321 A KL+++N+PFQA +++ +F V V IP +GFAFV+ ++DA Sbjct: 328 AQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAAN 387 Query: 322 ILEWFGVSTHLYGRR 336 ++ F + H++G+R Sbjct: 388 AIKKF--NGHMFGKR 400 Score = 38.5 bits (88), Expect = 0.14 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Query: 270 VKNVPFQADAQELRKLFQTKAQVK-AVRIPVKRNKQSRGFAFVECASREDAQKILEWFGV 328 V +P+ +L + F V+ + K + + RGFAFV+ A +ED + +E Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83 Query: 329 STHLYGRRLVIEQSAER 345 ST + GRR+ ++Q+A R Sbjct: 84 ST-VGGRRITVKQAAHR 99 >gi|23136705|gb|ZP_00118421.1| hypothetical protein [Cytophaga hutchinsonii] Length = 143 Score = 42.0 bits (97), Expect = 0.013 Identities = 25/79 (31%), Positives = 43/79 (53%), Gaps = 2/79 (2%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFVECASREDAQKILEWF 326 + V ++PF + ELR+ F+ +V +V+ I K +S+GF FVE AQK ++ Sbjct: 3 IFVGSLPFSLEENELREFFEEYGEVSSVKIISDKFTGRSKGFGFVEMPDDAAAQKAIDEL 62 Query: 327 GVSTHLYGRRLVIEQSAER 345 + GR +V+ +S E+ Sbjct: 63 N-GAEVNGRTIVVNKSEEK 80 >gi|21289521|gb|EAA01814.1| agCP12213 [Anopheles gambiae str. PEST] Length = 556 Score = 42.0 bits (97), Expect = 0.013 Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEW 325 TK+ V N+ ++ DA++L+++F+ +++++ + V ++ SRGFA +E +A + + Sbjct: 228 TKIFVANLDYKVDAKKLKQVFKLAGKIQSLDLSVDKDGNSRGFAVIEYDHPVEAVQAISM 287 Query: 326 FGVSTHLYGRRLVI 339 F L+ RR+ + Sbjct: 288 FD-RQMLFDRRMTV 300 Score = 33.5 bits (75), Expect = 4.7 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTK-AQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEW 325 ++ V NVP++ Q+L+ LF+ + V V + N + RG VE E Q LE Sbjct: 87 RIYVSNVPYEYRWQDLKDLFRKEVGDVSFVELFHDENNKPRGCGIVEFEKPEHVQMALEK 146 Query: 326 FGVSTHLYGRRLVIEQ 341 + GR LVI++ Sbjct: 147 MN-RYDINGRNLVIKE 161 >gi|212412|gb|AAA48983.1| nucleolin/C23 Length = 288 Score = 42.0 bits (97), Expect = 0.013 Identities = 36/134 (26%), Positives = 65/134 (47%), Gaps = 21/134 (15%) Query: 225 SETVALLKFCSERDAMRCFKRMEKAEF-------------LPLSTKPGKVAATSTKLVVK 271 S+ +A ++F +ER+A + + + E ++ G S L+V Sbjct: 1 SKGMAYIEFKTEREAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVN 60 Query: 272 NVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSR--GFAFVECASREDAQKILEWFGVS 329 N+ + A + L++LF+ KA I + +N Q R G+AFVE + EDA++ L + Sbjct: 61 NLSYAASEETLQELFK-----KATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCN-T 114 Query: 330 THLYGRRLVIEQSA 343 T + GR + +E S+ Sbjct: 115 TEIEGRAIRLEFSS 128 >gi|12230584|sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A) gi|100293|pir||S20069 ribonucleoprotein A, 29K - wood tobacco gi|19754|emb|CAA43427.1| 29kD A ribonucleoprotein [Nicotiana sylvestris] Length = 273 Score = 42.0 bits (97), Expect = 0.013 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILEW 325 K+ V N+PF AD+ L +LF+ V+ V + K +SRGF FV +S+E+ + + Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 326 FGVSTHLYGRRL 337 F L GR L Sbjct: 148 FN-GYELDGRAL 158 Score = 32.7 bits (73), Expect = 7.9 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 264 TSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKI 322 +S ++ V N+ + D L LF + +V ++ R+ +SRGF FV +S E+ Sbjct: 186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNA 245 Query: 323 LE 324 +E Sbjct: 246 IE 247 >gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans] Length = 705 Score = 41.6 bits (96), Expect = 0.017 Identities = 19/65 (29%), Positives = 36/65 (55%) Query: 260 KVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDA 319 ++ A T + +KN+ + + +E RKLF+ ++ + + +SRGF FV ++ E A Sbjct: 217 EMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESA 276 Query: 320 QKILE 324 Q +E Sbjct: 277 QAAVE 281 >gi|17543644|ref|NP_500025.1| RNA-binding region containing 2 like (65.0 kD) [Caenorhabditis elegans] gi|15487611|gb|AAF60795.2| Hypothetical protein Y55F3AM.3a [Caenorhabditis elegans] Length = 580 Score = 41.6 bits (96), Expect = 0.017 Identities = 24/81 (29%), Positives = 49/81 (59%), Gaps = 3/81 (3%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEW 325 T ++V+N+ + D + +R +F++ +++ + + V N+++RGFA + + +DAQK E Sbjct: 272 THVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQ 331 Query: 326 FGVSTHLYGR--RLVIEQSAE 344 + L GR RL I+Q ++ Sbjct: 332 LN-NFELAGRCIRLSIKQESQ 351 >gi|6981248|ref|NP_036881.1| nucleolin [Rattus norvegicus] gi|128844|sp|P13383|NUCL_RAT Nucleolin (Protein C23) gi|205792|gb|AAA41732.1| nucleolin Length = 713 Score = 41.6 bits (96), Expect = 0.017 Identities = 31/115 (26%), Positives = 56/115 (47%), Gaps = 19/115 (16%) Query: 225 SETVALLKFCSERDAMRCFKRMEKAEFLPLST----------------KPGKVAATSTKL 268 S+ +A ++F SE DA + + + AE S K + S L Sbjct: 432 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTL 491 Query: 269 VVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 V+ N+ + A + L+++F+ +K +P + +S+G+AF+E AS EDA++ L Sbjct: 492 VLSNLSYSATEETLQEVFEKATFIK---VPQNPHGKSKGYAFIEFASFEDAKEAL 543 Score = 38.5 bits (88), Expect = 0.14 Identities = 22/65 (33%), Positives = 38/65 (57%), Gaps = 5/65 (7%) Query: 260 KVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDA 319 KV A T L+ KN+ F EL+++F+ +++ V ++ +S+G A++E S DA Sbjct: 392 KVRAART-LLAKNLSFNITEDELKEVFEDAVEIRLV----SQDGRSKGIAYIEFKSEADA 446 Query: 320 QKILE 324 +K LE Sbjct: 447 EKNLE 451 >gi|92559|pir||JH0148 nucleolin - rat Length = 712 Score = 41.6 bits (96), Expect = 0.017 Identities = 31/115 (26%), Positives = 56/115 (47%), Gaps = 19/115 (16%) Query: 225 SETVALLKFCSERDAMRCFKRMEKAEFLPLST----------------KPGKVAATSTKL 268 S+ +A ++F SE DA + + + AE S K + S L Sbjct: 431 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTL 490 Query: 269 VVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 V+ N+ + A + L+++F+ +K +P + +S+G+AF+E AS EDA++ L Sbjct: 491 VLSNLSYSATEETLQEVFEKATFIK---VPQNPHGKSKGYAFIEFASFEDAKEAL 542 Score = 38.5 bits (88), Expect = 0.14 Identities = 22/65 (33%), Positives = 38/65 (57%), Gaps = 5/65 (7%) Query: 260 KVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDA 319 KV A T L+ KN+ F EL+++F+ +++ V ++ +S+G A++E S DA Sbjct: 391 KVRAART-LLAKNLSFNITEDELKEVFEDAVEIRLV----SQDGRSKGIAYIEFKSEADA 445 Query: 320 QKILE 324 +K LE Sbjct: 446 EKNLE 450 >gi|19113513|ref|NP_596721.1| similar to C-term of yeast U4/U6 splicing factor PRP24 [Schizosaccharomyces pombe] gi|7493545|pir||T39743 U4/U6 splicing factor PRP24 homolog - fission yeast (Schizosaccharomyces pombe) gi|5734577|emb|CAB52740.1| similar to C-term of yeast U4/U6 splicing factor PRP24 [Schizosaccharomyces pombe] Length = 1014 Score = 41.6 bits (96), Expect = 0.017 Identities = 21/61 (34%), Positives = 36/61 (58%), Gaps = 1/61 (1%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWF 326 +L V N+ F+ + +++ F+ QV++VRIP KR Q +GF +V + +DA+ L Sbjct: 758 ELYVTNIDFKVNEKDVETFFRDYGQVESVRIP-KRFNQHKGFGYVVMTTNQDAENALSAA 816 Query: 327 G 327 G Sbjct: 817 G 817 Score = 34.3 bits (77), Expect = 2.7 Identities = 19/59 (32%), Positives = 27/59 (45%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 T L V N P D ++ KLF V VR P R +R F +V+ ++A L+ Sbjct: 666 TNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQ 724 >gi|253181|gb|AAB22809.1| NSR1=nucleolin homolog [Saccharomyces cerevisiae, Peptide, 249 aa] Length = 249 Score = 41.6 bits (96), Expect = 0.017 Identities = 22/61 (36%), Positives = 36/61 (58%), Gaps = 1/61 (1%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKIL 323 S L + N+ F AD + +LF +V +VRIP +Q +GF +V+ ++ EDA+K L Sbjct: 101 SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKAL 160 Query: 324 E 324 + Sbjct: 161 D 161 >gi|25148310|ref|NP_741301.1| RNA-binding region containing 2 like (47.5 kD) [Caenorhabditis elegans] gi|22532839|gb|AAM97977.1| Hypothetical protein Y55F3AM.3c [Caenorhabditis elegans] Length = 435 Score = 41.6 bits (96), Expect = 0.017 Identities = 24/81 (29%), Positives = 49/81 (59%), Gaps = 3/81 (3%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEW 325 T ++V+N+ + D + +R +F++ +++ + + V N+++RGFA + + +DAQK E Sbjct: 127 THVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQ 186 Query: 326 FGVSTHLYGR--RLVIEQSAE 344 + L GR RL I+Q ++ Sbjct: 187 LN-NFELAGRCIRLSIKQESQ 206 >gi|6321599|ref|NP_011675.1| nuclear localization sequence binding protein; Nsr1p [Saccharomyces cerevisiae] gi|128576|sp|P27476|NSR1_YEAST Nuclear localization sequence binding protein (P67) gi|101457|pir||A39205 nuclear localization sequence-binding protein NSR1 - yeast (Saccharomyces cerevisiae) gi|4058|emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces cerevisiae] gi|1045265|emb|CAA59817.1| ORF G7001 [Saccharomyces cerevisiae] gi|1323271|emb|CAA97173.1| ORF YGR159c [Saccharomyces cerevisiae] Length = 414 Score = 41.6 bits (96), Expect = 0.017 Identities = 22/61 (36%), Positives = 36/61 (58%), Gaps = 1/61 (1%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKIL 323 S L + N+ F AD + +LF +V +VRIP +Q +GF +V+ ++ EDA+K L Sbjct: 266 SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKAL 325 Query: 324 E 324 + Sbjct: 326 D 326 >gi|6502554|gb|AAF14355.1|AF113139_1 nucleolar protein Nop4 [Eremothecium gossypii] Length = 167 Score = 41.6 bits (96), Expect = 0.017 Identities = 28/78 (35%), Positives = 35/78 (43%), Gaps = 1/78 (1%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFG 327 L V+N+PF A EL F A +K I SRGF FV A D Q L+ G Sbjct: 19 LFVRNIPFDATDAELTDFFSQFAPIKHAVIVKDNAGSSRGFGFVSFAVESDTQAALD-KG 77 Query: 328 VSTHLYGRRLVIEQSAER 345 T GR L ++ + R Sbjct: 78 RKTQFKGRLLRVDVAKRR 95 >gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus] Length = 381 Score = 41.2 bits (95), Expect = 0.022 Identities = 28/85 (32%), Positives = 46/85 (53%), Gaps = 3/85 (3%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQK- 321 AT T + VKN D ++L KLF ++V++ +S+GF FV + E AQK Sbjct: 195 ATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKA 254 Query: 322 ILEWFGVSTHLYGRRLVIEQSAERI 346 +LE G S + G+ L + ++ ++I Sbjct: 255 VLELHGKS--IDGKVLCVGRAQKKI 277 >gi|11045077|emb|CAB41488.2| putative FCA orthologue [Brassica napus] Length = 384 Score = 41.2 bits (95), Expect = 0.022 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 15/141 (10%) Query: 199 RSKTELIVRDF-----NVADLPAECETKIAPSETVALLKFCSERDAMRCFKRMEKAEFLP 253 R+ TE VR F NV ++ + + + +K+ + DA R + + LP Sbjct: 114 RTATEEEVRPFFEQHGNVLEVAFIKDKRTGQQQGCCFVKYATSEDADRAIRALHNQITLP 173 Query: 254 LST----------KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK 303 T + ++ A KL V ++ QA E+ +LF +V+ V + + Sbjct: 174 GGTGLVQVRYADGERERIGAVEFKLFVGSLNKQATENEVEELFLQFGRVEDVYLMRDEYR 233 Query: 304 QSRGFAFVECASREDAQKILE 324 QSRG FV+ +S+E A ++ Sbjct: 234 QSRGCGFVKYSSKETAMAAID 254 Score = 35.4 bits (80), Expect = 1.2 Identities = 22/62 (35%), Positives = 33/62 (52%), Gaps = 1/62 (1%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFVECASREDAQK 321 ++ KL V +VP A +E+R F+ V V I KR Q +G FV+ A+ EDA + Sbjct: 102 SSMVKLFVGSVPRTATEEEVRPFFEQHGNVLEVAFIKDKRTGQQQGCCFVKYATSEDADR 161 Query: 322 IL 323 + Sbjct: 162 AI 163 >gi|20985309|ref|XP_142058.1| similar to poly(A) binding protein, cytoplasmic 5 [Homo sapiens] [Mus musculus] Length = 664 Score = 41.2 bits (95), Expect = 0.022 Identities = 28/85 (32%), Positives = 46/85 (53%), Gaps = 3/85 (3%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQK- 321 AT T + VKN D ++L KLF ++V++ +S+GF FV + E AQK Sbjct: 478 ATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKA 537 Query: 322 ILEWFGVSTHLYGRRLVIEQSAERI 346 +LE G S + G+ L + ++ ++I Sbjct: 538 VLELHGKS--IDGKVLCVGRAQKKI 560 >gi|17508585|ref|NP_493022.1| Cleavage stimulation factor family member (9.2 kD) [Caenorhabditis elegans] gi|7506500|pir||T24067 hypothetical protein R09B3.2 - Caenorhabditis elegans gi|3879015|emb|CAB03236.1| Hypothetical protein R09B3.2 [Caenorhabditis elegans] Length = 83 Score = 41.2 bits (95), Expect = 0.022 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 270 VKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILE 324 V N PFQ +EL F + Q+ VRI R + RGFAF+E A AQ+ +E Sbjct: 9 VGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64 >gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes] Length = 623 Score = 41.2 bits (95), Expect = 0.022 Identities = 24/87 (27%), Positives = 43/87 (48%), Gaps = 1/87 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + +KN D + L++LF + +V++ + +SRGF FV ED Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHED 243 Query: 319 AQKILEWFGVSTHLYGRRLVIEQSAER 345 A K +E T L G+ + + ++ ++ Sbjct: 244 ANKAVEDMN-GTELNGKTVFVGRAQKK 269 >gi|18150431|gb|AAL61622.1|AF414188_1 FCA gamma [Brassica napus] Length = 715 Score = 41.2 bits (95), Expect = 0.022 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 15/141 (10%) Query: 199 RSKTELIVRDF-----NVADLPAECETKIAPSETVALLKFCSERDAMRCFKRMEKAEFLP 253 R+ TE VR F NV ++ + + + +K+ + DA R + + LP Sbjct: 111 RTATEEEVRPFFEQHGNVLEVAFIKDKRTGQQQGCCFVKYATSEDADRAIRALHNQITLP 170 Query: 254 LST----------KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK 303 T + ++ A KL V ++ QA E+ +LF +V+ V + + Sbjct: 171 GGTGLVQVRYADGERERIGAVEFKLFVGSLNKQATENEVEELFLQFGRVEDVYLMRDEYR 230 Query: 304 QSRGFAFVECASREDAQKILE 324 QSRG FV+ +S+E A ++ Sbjct: 231 QSRGCGFVKYSSKETAMAAID 251 Score = 35.4 bits (80), Expect = 1.2 Identities = 22/62 (35%), Positives = 33/62 (52%), Gaps = 1/62 (1%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFVECASREDAQK 321 ++ KL V +VP A +E+R F+ V V I KR Q +G FV+ A+ EDA + Sbjct: 99 SSMVKLFVGSVPRTATEEEVRPFFEQHGNVLEVAFIKDKRTGQQQGCCFVKYATSEDADR 158 Query: 322 IL 323 + Sbjct: 159 AI 160 >gi|13548328|emb|CAC35875.1| putative protein [Arabidopsis thaliana] Length = 768 Score = 41.2 bits (95), Expect = 0.022 Identities = 19/67 (28%), Positives = 38/67 (56%) Query: 260 KVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDA 319 K ++ ++++VKNVP +LR +F K ++ V++ + +SR FA++ S + A Sbjct: 26 KNVSSGSRIIVKNVPKYVTEDQLRGIFSEKGEITDVKLKRLSDGRSRQFAYIGFRSEQKA 85 Query: 320 QKILEWF 326 Q + +F Sbjct: 86 QDAITYF 92 Score = 35.4 bits (80), Expect = 1.2 Identities = 18/48 (37%), Positives = 29/48 (59%), Gaps = 1/48 (2%) Query: 293 KAVRIPVKRNKQSRGFAFVECASREDAQKILEWFGVSTHLYGRRLVIE 340 K V +P+K ++ G+AFVE + ++A + +TH YGR LV+E Sbjct: 675 KRVGLPLKNVRKYAGYAFVEFGTMQEALNAKKALS-NTHFYGRHLVLE 721 >gi|22296371|dbj|BAC10140.1| putative ribonucleoprotein [Oryza sativa (japonica cultivar-group)] Length = 264 Score = 41.2 bits (95), Expect = 0.022 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQK 321 A K+ V N+PF D+ +L LF+ V+ V + R +SRGF FV ++ E+A Sbjct: 77 AEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGA 136 Query: 322 ILEWF 326 +E F Sbjct: 137 AVEQF 141 >gi|15231912|ref|NP_187457.1| RRM-containing protein; protein id: At3g08000.1 [Arabidopsis thaliana] gi|6648212|gb|AAF21210.1|AC013483_34 putative RNA-binding protein [Arabidopsis thaliana] Length = 143 Score = 40.8 bits (94), Expect = 0.029 Identities = 30/88 (34%), Positives = 44/88 (49%), Gaps = 2/88 (2%) Query: 262 AATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQ 320 A+ S+KL + + + D Q L+ F + +V VRI K + +SRGF FV+ A DA Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96 Query: 321 KILEWFGVSTHLYGRRLVIEQSAERIFG 348 + L GR L I + ER+ G Sbjct: 97 SAKDAMD-GKGLLGRPLRISFALERVRG 123 >gi|15226983|ref|NP_181084.1| chloroplast RNA-binding protein cp33, putative; protein id: At2g35410.1, supported by cDNA: gi_14596022 [Arabidopsis thaliana] gi|25386549|pir||C84768 hypothetical protein At2g35410 [imported] - Arabidopsis thaliana gi|3608147|gb|AAC36180.1| putative chloroplast RNA binding protein precursor [Arabidopsis thaliana] gi|14596023|gb|AAK68739.1| putative chloroplast RNA binding protein precursor [Arabidopsis thaliana] gi|23198314|gb|AAN15684.1| putative chloroplast RNA binding protein precursor [Arabidopsis thaliana] Length = 308 Score = 40.8 bits (94), Expect = 0.029 Identities = 22/60 (36%), Positives = 35/60 (57%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWF 326 KL V N+P+ ++ +LF V V I +++ ++RGFAFV AS E+AQ ++ F Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155 >gi|15238390|ref|NP_201329.1| polyadenylate-binding protein II (PAB2), putative; protein id: At5g65260.1, supported by cDNA: gi_14423493 [Arabidopsis thaliana] gi|10178188|dbj|BAB11662.1| poly(A)-binding protein II-like [Arabidopsis thaliana] gi|14423494|gb|AAK62429.1|AF386984_1 poly(A)-binding protein II-like [Arabidopsis thaliana] gi|23197620|gb|AAN15337.1| poly(A)-binding protein II-like [Arabidopsis thaliana] Length = 220 Score = 40.8 bits (94), Expect = 0.029 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Query: 255 STKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECA 314 + + GK + + V NV + +E+++ FQT V V I + Q +GFA+VE Sbjct: 81 ANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFV 140 Query: 315 SREDAQKILEWFGVSTHLYGRRLVIEQSAERIFG 348 E Q+ L+ + L+GR+L + Q + G Sbjct: 141 EVEAVQEALQL--NESELHGRQLKVLQKRTNVPG 172 >gi|23508396|ref|NP_701065.1| hypothetical protein [Plasmodium falciparum 3D7] gi|23496128|gb|AAN35789.1|AE014838_67 hypothetical protein [Plasmodium falciparum 3D7] Length = 200 Score = 40.8 bits (94), Expect = 0.029 Identities = 19/65 (29%), Positives = 34/65 (52%) Query: 260 KVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDA 319 K+ +L V N+P A QEL K+F+ ++ + I RN +AF+E + + A Sbjct: 3 KLINCGNRLYVGNIPGSATRQELIKIFEEYGKISDIDIKYNRNSNGTNYAFIEYENPKSA 62 Query: 320 QKILE 324 +K ++ Sbjct: 63 EKTIQ 67 >gi|26345390|dbj|BAC36346.1| unnamed protein product [Mus musculus] Length = 254 Score = 40.4 bits (93), Expect = 0.038 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILE 324 T L V N+ ++ LR++F+ +V V IP R K+SRGFAFV + DA+ ++ Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73 Query: 325 WFGVSTHLYGRRLVIEQS 342 + L GR L ++ + Sbjct: 74 AMDGAV-LDGRELRVQMA 90 >gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis] Length = 629 Score = 40.4 bits (93), Expect = 0.038 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEW 325 T + +KN D + LR++F +V++ + + +SRGF FV + E+AQK + Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSE 250 Query: 326 FGVSTHLYGRRLVIEQSAERI 346 + GR + + ++ +RI Sbjct: 251 MN-GKEVNGRMIYVGRAQKRI 270 >gi|2204089|emb|CAB05388.1| FCA gamma [Arabidopsis thaliana] Length = 747 Score = 40.4 bits (93), Expect = 0.038 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 15/141 (10%) Query: 199 RSKTELIVRDF-----NVADLPAECETKIAPSETVALLKFCSERDAMRCFKRMEKAEFLP 253 R+ TE +R + NV ++ + + + +K+ + +DA R + + LP Sbjct: 129 RTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLP 188 Query: 254 LSTKP----------GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK 303 T P ++ KL V ++ QA +E+ ++F V+ V + + Sbjct: 189 GGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR 248 Query: 304 QSRGFAFVECASREDAQKILE 324 QSRG FV+ +S+E A ++ Sbjct: 249 QSRGCGFVKYSSKETAMAAID 269 Score = 34.7 bits (78), Expect = 2.1 Identities = 21/62 (33%), Positives = 34/62 (53%), Gaps = 1/62 (1%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFVECASREDAQK 321 +++ KL V +VP A +E+R F+ V V I KR Q +G FV+ A+ +DA + Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176 Query: 322 IL 323 + Sbjct: 177 AI 178 >gi|22328716|ref|NP_680712.1| Flowering time control protein (FCA); protein id: At4g16280.3 [Arabidopsis thaliana] gi|25407542|pir||A85181 FCA delta protein [imported] - Arabidopsis thaliana gi|2204096|emb|CAB05392.1| FCA delta [Arabidopsis thaliana] gi|5302786|emb|CAB46035.1| FCA delta protein [Arabidopsis thaliana] gi|7268378|emb|CAB78671.1| FCA delta protein [Arabidopsis thaliana] Length = 533 Score = 40.4 bits (93), Expect = 0.038 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 15/141 (10%) Query: 199 RSKTELIVRDF-----NVADLPAECETKIAPSETVALLKFCSERDAMRCFKRMEKAEFLP 253 R+ TE +R + NV ++ + + + +K+ + +DA R + + LP Sbjct: 129 RTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLP 188 Query: 254 LSTKP----------GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK 303 T P ++ KL V ++ QA +E+ ++F V+ V + + Sbjct: 189 GGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR 248 Query: 304 QSRGFAFVECASREDAQKILE 324 QSRG FV+ +S+E A ++ Sbjct: 249 QSRGCGFVKYSSKETAMAAID 269 Score = 34.7 bits (78), Expect = 2.1 Identities = 21/62 (33%), Positives = 34/62 (53%), Gaps = 1/62 (1%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFVECASREDAQK 321 +++ KL V +VP A +E+R F+ V V I KR Q +G FV+ A+ +DA + Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176 Query: 322 IL 323 + Sbjct: 177 AI 178 >gi|22328713|ref|NP_680711.1| Flowering time control protein (FCA); protein id: At4g16280.2 [Arabidopsis thaliana] gi|7430376|pir||E71429 probable FCA gamma - Arabidopsis thaliana gi|2244986|emb|CAB10407.1| FCA gamma protein [Arabidopsis thaliana] gi|7268377|emb|CAB78670.1| FCA gamma protein [Arabidopsis thaliana] Length = 747 Score = 40.4 bits (93), Expect = 0.038 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 15/141 (10%) Query: 199 RSKTELIVRDF-----NVADLPAECETKIAPSETVALLKFCSERDAMRCFKRMEKAEFLP 253 R+ TE +R + NV ++ + + + +K+ + +DA R + + LP Sbjct: 129 RTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLP 188 Query: 254 LSTKP----------GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK 303 T P ++ KL V ++ QA +E+ ++F V+ V + + Sbjct: 189 GGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR 248 Query: 304 QSRGFAFVECASREDAQKILE 324 QSRG FV+ +S+E A ++ Sbjct: 249 QSRGCGFVKYSSKETAMAAID 269 Score = 34.7 bits (78), Expect = 2.1 Identities = 21/62 (33%), Positives = 34/62 (53%), Gaps = 1/62 (1%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFVECASREDAQK 321 +++ KL V +VP A +E+R F+ V V I KR Q +G FV+ A+ +DA + Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176 Query: 322 IL 323 + Sbjct: 177 AI 178 >gi|17532819|ref|NP_495014.1| pre-mRNA splicing SR Protein RSP-4 (rsp-4) [Caenorhabditis elegans] gi|14574034|gb|AAK68298.1|U23484_14 Sr protein (splicing factor) protein 4, isoform b [Caenorhabditis elegans] Length = 126 Score = 40.4 bits (93), Expect = 0.038 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILE 324 T L + N+ +Q +LR+ F+ + V IP K ++QS+GF FV R DA+ L+ Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78 >gi|1405747|emb|CAA67134.1| PR264/SC35 [Mus musculus] Length = 121 Score = 40.4 bits (93), Expect = 0.038 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILE 324 T L V N+ ++ LR++F+ +V V IP R K+SRGFAFV + DA+ ++ Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73 Query: 325 WFGVSTHLYGRRLVIEQS 342 + L GR L ++ + Sbjct: 74 AMDGAV-LDGRELRVQMA 90 >gi|3023721|sp|O04425|FCA_ARATH Flowering time control protein FCA gi|2204095|emb|CAB05391.1| FCA gamma [Arabidopsis thaliana] Length = 747 Score = 40.4 bits (93), Expect = 0.038 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 15/141 (10%) Query: 199 RSKTELIVRDF-----NVADLPAECETKIAPSETVALLKFCSERDAMRCFKRMEKAEFLP 253 R+ TE +R + NV ++ + + + +K+ + +DA R + + LP Sbjct: 129 RTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLP 188 Query: 254 LSTKP----------GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK 303 T P ++ KL V ++ QA +E+ ++F V+ V + + Sbjct: 189 GGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR 248 Query: 304 QSRGFAFVECASREDAQKILE 324 QSRG FV+ +S+E A ++ Sbjct: 249 QSRGCGFVKYSSKETAMAAID 269 Score = 34.7 bits (78), Expect = 2.1 Identities = 21/62 (33%), Positives = 34/62 (53%), Gaps = 1/62 (1%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFVECASREDAQK 321 +++ KL V +VP A +E+R F+ V V I KR Q +G FV+ A+ +DA + Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176 Query: 322 IL 323 + Sbjct: 177 AI 178 >gi|2204091|emb|CAB05389.1| FCA delta [Arabidopsis thaliana] Length = 533 Score = 40.4 bits (93), Expect = 0.038 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 15/141 (10%) Query: 199 RSKTELIVRDF-----NVADLPAECETKIAPSETVALLKFCSERDAMRCFKRMEKAEFLP 253 R+ TE +R + NV ++ + + + +K+ + +DA R + + LP Sbjct: 129 RTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLP 188 Query: 254 LSTKP----------GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK 303 T P ++ KL V ++ QA +E+ ++F V+ V + + Sbjct: 189 GGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR 248 Query: 304 QSRGFAFVECASREDAQKILE 324 QSRG FV+ +S+E A ++ Sbjct: 249 QSRGCGFVKYSSKETAMAAID 269 Score = 34.7 bits (78), Expect = 2.1 Identities = 21/62 (33%), Positives = 34/62 (53%), Gaps = 1/62 (1%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFVECASREDAQK 321 +++ KL V +VP A +E+R F+ V V I KR Q +G FV+ A+ +DA + Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176 Query: 322 IL 323 + Sbjct: 177 AI 178 >gi|21751099|dbj|BAC03903.1| unnamed protein product [Homo sapiens] Length = 201 Score = 40.4 bits (93), Expect = 0.038 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILE 324 T L V N+ ++ LR++F+ +V V IP R K+SRGFAFV + DA+ ++ Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73 Query: 325 WFGVSTHLYGRRLVIEQS 342 + L GR L ++ + Sbjct: 74 AMDGAV-LDGRELRVQMA 90 >gi|7446357|pir||T06817 RNA-binding protein - garden pea gi|2330647|emb|CAA74889.1| ribonucleoprotein [Pisum sativum] gi|10179830|gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum] Length = 291 Score = 40.4 bits (93), Expect = 0.038 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILEW 325 KL V N+P+ D+++L LF+ V+ + R QSRGF FV ++ E+A+ Sbjct: 110 KLFVGNLPYDVDSEKLAMLFEPAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEAGAAK 169 Query: 326 FGVSTHLYGRRLVIEQSAER 345 F + GR L + ++A R Sbjct: 170 FNRYDY-NGRPLTVNKAAPR 188 >gi|266991|sp|P30352|SFR2_CHICK Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) gi|539509|pir||B42701 PR264 protein - chicken gi|63752|emb|CAA44306.1| PR 264 [Gallus gallus] gi|228503|prf||1805195A RNA-binding protein PR264 Length = 221 Score = 40.4 bits (93), Expect = 0.038 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILE 324 T L V N+ ++ LR++F+ +V V IP R K+SRGFAFV + DA+ ++ Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73 Query: 325 WFGVSTHLYGRRLVIEQS 342 + L GR L ++ + Sbjct: 74 AMDGAV-LDGRELRVQMA 90 >gi|6755478|ref|NP_035488.1| splicing factor, arginine/serine-rich 2; DNA segment, Chr 11, Wayne State University 175, expressed; splicing factor Sc35 [Mus musculus] gi|14769296|ref|XP_036785.1| similar to Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) [Homo sapiens] gi|18280933|sp|Q62093|SFR2_MOUSE Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) gi|539663|pir||A42701 splicing factor SFRS2 - human gi|35597|emb|CAA44307.1| PR 264 [Homo sapiens] gi|455419|emb|CAA53383.1| PR264/SC35 [Homo sapiens] gi|3335676|gb|AAC71000.1| splicing factor SC35 [Mus musculus] gi|12653143|gb|AAH00339.1|AAH00339 Similar to splicing factor, arginine/serine-rich 2 (SC-35) [Homo sapiens] gi|12654915|gb|AAH01303.1|AAH01303 Similar to splicing factor, arginine/serine-rich 2 (SC-35) [Homo sapiens] gi|13529557|gb|AAH05493.1| splicing factor, arginine/serine-rich 2 (SC-35) [Mus musculus] gi|26351947|dbj|BAC39610.1| unnamed protein product [Mus musculus] gi|26352962|dbj|BAC40111.1| unnamed protein product [Mus musculus] gi|228504|prf||1805195B RNA-binding protein PR264 Length = 221 Score = 40.4 bits (93), Expect = 0.038 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILE 324 T L V N+ ++ LR++F+ +V V IP R K+SRGFAFV + DA+ ++ Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73 Query: 325 WFGVSTHLYGRRLVIEQS 342 + L GR L ++ + Sbjct: 74 AMDGAV-LDGRELRVQMA 90 >gi|4504715|ref|NP_003810.1| poly(A)-binding protein, cytoplasmic 4 (inducible form); inducible poly(A)-binding protein [Homo sapiens] gi|12229875|sp|Q13310|PAB4_HUMAN Polyadenylate-binding protein 4 (Poly(A) binding protein 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein-1) (APP-1) gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens] gi|1585757|prf||2201474A inducible poly(A)-binding protein Length = 644 Score = 40.4 bits (93), Expect = 0.038 Identities = 21/66 (31%), Positives = 34/66 (50%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + +KN + D + L++LF + +V++ N +S+GF FV ED Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243 Query: 319 AQKILE 324 A K +E Sbjct: 244 ANKAVE 249 >gi|17561816|ref|NP_504717.1| RNA recognition motif containing protein, SPiNdle orientation defective SPN-4, GEX (Gut on EXterior) Interacting protein GEI-20 (39.2 kD) (spn-4) [Caenorhabditis elegans] gi|7510733|pir||T29369 hypothetical protein ZC404.8 - Caenorhabditis elegans gi|1280052|gb|AAA97963.1| Gex interacting protein protein 20 [Caenorhabditis elegans] Length = 351 Score = 40.4 bits (93), Expect = 0.038 Identities = 28/94 (29%), Positives = 47/94 (49%), Gaps = 5/94 (5%) Query: 252 LPLSTKPGK---VAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGF 308 +P+S KP + T ++ V N+PF Q+L +F +V +V I V ++ S+GF Sbjct: 34 MPISVKPKTREPASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEI-VTNDRGSKGF 92 Query: 309 AFVECASREDAQKILEWFGVSTHLYGRRLVIEQS 342 FV S E +K S H+ GR + + ++ Sbjct: 93 GFVTLDSIESCEKARAALHES-HVQGRIIEVRRA 125 >gi|17532817|ref|NP_495013.1| pre-mRNA splicing SR Protein RSP-4 (22.6 kD) (rsp-4) [Caenorhabditis elegans] gi|3929375|sp|Q09511|SFR2_CAEEL Putative splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) gi|7439997|pir||T15917 hypothetical protein EEED8.7 - Caenorhabditis elegans gi|733604|gb|AAC46767.1| Sr protein (splicing factor) protein 4, isoform a [Caenorhabditis elegans] Length = 196 Score = 40.4 bits (93), Expect = 0.038 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILE 324 T L + N+ +Q +LR+ F+ + V IP K ++QS+GF FV R DA+ L+ Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78 >gi|4506899|ref|NP_003007.1| splicing factor, arginine/serine-rich 2 [Homo sapiens] gi|266992|sp|Q01130|SFR2_HUMAN Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) gi|337926|gb|AAA60306.1| splicing factor Length = 221 Score = 40.0 bits (92), Expect = 0.050 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILE 324 T L V N+ ++ LR++F+ +V V IP R K+SRGFAFV + DA+ ++ Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYRRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73 Query: 325 WFGVSTHLYGRRLVIEQS 342 + L GR L ++ + Sbjct: 74 AMDGAV-LDGRELRVQMA 90 >gi|7512684|pir||T34543 hypothetical protein DKFZp434O1221.1 - human (fragment) gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens] Length = 367 Score = 40.0 bits (92), Expect = 0.050 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQK- 321 AT T + VKN+ D ++L++LF ++V++ + +S+GF FV + E AQK Sbjct: 181 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 240 Query: 322 ILEWFGVSTHLYGRRLVIEQSAERI 346 +L+ G S + G+ L + ++ ++I Sbjct: 241 VLDLHGKS--IDGKVLYVGRAQKKI 263 >gi|7446360|pir||T09108 RNA binding protein, 24K, chloroplast - spinach (fragment) gi|1015370|gb|AAA79045.1| 24 kDa RNA binding protein Length = 220 Score = 40.0 bits (92), Expect = 0.050 Identities = 26/80 (32%), Positives = 41/80 (50%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILEW 325 K+ V N+PF D+ EL LF V+ V + K +SRGF FV +S E+ + + Sbjct: 39 KIFVGNLPFNVDSAELAGLFGAAGTVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAAQQ 98 Query: 326 FGVSTHLYGRRLVIEQSAER 345 F + L GR L + + + + Sbjct: 99 FN-NYELDGRTLRVTEDSHK 117 >gi|7106377|ref|NP_035010.1| nucleolin [Mus musculus] gi|128843|sp|P09405|NUCL_MOUSE Nucleolin (Protein C23) gi|70844|pir||DNMS nucleolin - mouse gi|53454|emb|CAA30538.1| nucleolin [Mus musculus] gi|12802527|gb|AAK07920.1|AF318184_1 nucleolin [Mus musculus] gi|26350437|dbj|BAC38858.1| unnamed protein product [Mus musculus] Length = 707 Score = 40.0 bits (92), Expect = 0.050 Identities = 31/115 (26%), Positives = 57/115 (48%), Gaps = 19/115 (16%) Query: 225 SETVALLKFCSERDAMRCFKRMEKAEFLPLST-------------KPGKVAATSTK---L 268 S+ +A ++F SE DA + + + AE S + GK + S + L Sbjct: 430 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTL 489 Query: 269 VVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 V+ N+ + A + L ++F+ +K +P + + +G+AF+E AS EDA++ L Sbjct: 490 VLSNLSYSATKETLEEVFEKATFIK---VPQNPHGKPKGYAFIEFASFEDAKEAL 541 Score = 38.1 bits (87), Expect = 0.19 Identities = 22/65 (33%), Positives = 38/65 (57%), Gaps = 5/65 (7%) Query: 260 KVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDA 319 KV A T L+ KN+ F EL+++F+ +++ V ++ +S+G A++E S DA Sbjct: 390 KVRAART-LLAKNLSFNITEDELKEVFEDAMEIRLV----SQDGKSKGIAYIEFKSEADA 444 Query: 320 QKILE 324 +K LE Sbjct: 445 EKNLE 449 >gi|20559158|ref|XP_114158.1| similar to dJ148E22.2 (novel PABPC1 (poly(A)-binding protein, cytoplasmic 1) (PABPL1) like protein) [Homo sapiens] Length = 330 Score = 40.0 bits (92), Expect = 0.050 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + VKN+P D Q L+ LF ++ +V++ + SR F FV E+ Sbjct: 184 GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243 Query: 319 AQKILEWFGVSTHLYGRRLVIEQSAERI 346 AQK + + GR L ++ +R+ Sbjct: 244 AQKAVVHMN-GKEVSGRLLYAGRAQKRV 270 >gi|18201888|ref|NP_543022.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens] gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla] gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar] gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus] gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes] gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens] Length = 382 Score = 40.0 bits (92), Expect = 0.050 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQK- 321 AT T + VKN+ D ++L++LF ++V++ + +S+GF FV + E AQK Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255 Query: 322 ILEWFGVSTHLYGRRLVIEQSAERI 346 +L+ G S + G+ L + ++ ++I Sbjct: 256 VLDLHGKS--IDGKVLYVGRAQKKI 278 >gi|26325114|dbj|BAC26311.1| unnamed protein product [Mus musculus] Length = 707 Score = 40.0 bits (92), Expect = 0.050 Identities = 31/115 (26%), Positives = 57/115 (48%), Gaps = 19/115 (16%) Query: 225 SETVALLKFCSERDAMRCFKRMEKAEFLPLST-------------KPGKVAATSTK---L 268 S+ +A ++F SE DA + + + AE S + GK + S + L Sbjct: 430 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTL 489 Query: 269 VVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 V+ N+ + A + L ++F+ +K +P + + +G+AF+E AS EDA++ L Sbjct: 490 VLSNLSYSATKETLEEVFEKATFIK---VPQNPHGKPKGYAFIEFASFEDAKEAL 541 Score = 38.1 bits (87), Expect = 0.19 Identities = 22/65 (33%), Positives = 38/65 (57%), Gaps = 5/65 (7%) Query: 260 KVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDA 319 KV A T L+ KN+ F EL+++F+ +++ V ++ +S+G A++E S DA Sbjct: 390 KVRAART-LLAKNLSFNITEDELKEVFEDAMEIRLV----SQDGKSKGIAYIEFKSEADA 444 Query: 320 QKILE 324 +K LE Sbjct: 445 EKNLE 449 >gi|3776057|emb|CAA15498.1| dJ148E22.2 (novel PABPC1 (poly(A)-binding protein, cytoplasmic 1) (PABPL1) like protein) [Homo sapiens] Length = 292 Score = 40.0 bits (92), Expect = 0.050 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + VKN+P D Q L+ LF ++ +V++ + SR F FV E+ Sbjct: 184 GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243 Query: 319 AQKILEWFGVSTHLYGRRLVIEQSAERI 346 AQK + + GR L ++ +R+ Sbjct: 244 AQKAVVHMN-GKEVSGRLLYAGRAQKRV 270 >gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta] gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin] Length = 382 Score = 40.0 bits (92), Expect = 0.050 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQK- 321 AT T + VKN+ D ++L++LF ++V++ + +S+GF FV + E AQK Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255 Query: 322 ILEWFGVSTHLYGRRLVIEQSAERI 346 +L+ G S + G+ L + ++ ++I Sbjct: 256 VLDLHGKS--IDGKVLYVGRAQKKI 278 >gi|13529464|gb|AAH05460.1| nucleolin [Mus musculus] Length = 707 Score = 40.0 bits (92), Expect = 0.050 Identities = 31/115 (26%), Positives = 57/115 (48%), Gaps = 19/115 (16%) Query: 225 SETVALLKFCSERDAMRCFKRMEKAEFLPLST-------------KPGKVAATSTK---L 268 S+ +A ++F SE DA + + + AE S + GK + S + L Sbjct: 430 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTL 489 Query: 269 VVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 V+ N+ + A + L ++F+ +K +P + + +G+AF+E AS EDA++ L Sbjct: 490 VLSNLSYSATKETLEEVFEKATFIK---VPQNPHGKPKGYAFIEFASFEDAKEAL 541 Score = 38.1 bits (87), Expect = 0.19 Identities = 22/65 (33%), Positives = 38/65 (57%), Gaps = 5/65 (7%) Query: 260 KVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDA 319 KV A T L+ KN+ F EL+++F+ +++ V ++ +S+G A++E S DA Sbjct: 390 KVRAART-LLAKNLSFNITEDELKEVFEDAMEIRLV----SQDGKSKGIAYIEFKSEADA 444 Query: 320 QKILE 324 +K LE Sbjct: 445 EKNLE 449 >gi|21358099|ref|NP_652612.1| CG5442-PB [Drosophila melanogaster] gi|7243688|gb|AAF43415.1|AF232775_1 SR family splicing factor SC35 [Drosophila melanogaster] gi|7297948|gb|AAF53192.1| CG5442-PB [Drosophila melanogaster] gi|17862504|gb|AAL39729.1| LD32469p [Drosophila melanogaster] Length = 195 Score = 40.0 bits (92), Expect = 0.050 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILE 324 L V N+ ++ ++LR++F+ +V + IP R ++SRGFAFV + DA+ LE Sbjct: 25 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALE 82 >gi|26341628|dbj|BAC34476.1| unnamed protein product [Mus musculus] Length = 550 Score = 40.0 bits (92), Expect = 0.050 Identities = 31/115 (26%), Positives = 57/115 (48%), Gaps = 19/115 (16%) Query: 225 SETVALLKFCSERDAMRCFKRMEKAEFLPLST-------------KPGKVAATSTK---L 268 S+ +A ++F SE DA + + + AE S + GK + S + L Sbjct: 273 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTL 332 Query: 269 VVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 V+ N+ + A + L ++F+ +K +P + + +G+AF+E AS EDA++ L Sbjct: 333 VLSNLSYSATKETLEEVFEKATFIK---VPQNPHGKPKGYAFIEFASFEDAKEAL 384 Score = 38.1 bits (87), Expect = 0.19 Identities = 22/65 (33%), Positives = 38/65 (57%), Gaps = 5/65 (7%) Query: 260 KVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDA 319 KV A T L+ KN+ F EL+++F+ +++ V ++ +S+G A++E S DA Sbjct: 233 KVRAART-LLAKNLSFNITEDELKEVFEDAMEIRLV----SQDGKSKGIAYIEFKSEADA 287 Query: 320 QKILE 324 +K LE Sbjct: 288 EKNLE 292 >gi|21752539|dbj|BAC04206.1| unnamed protein product [Homo sapiens] Length = 186 Score = 40.0 bits (92), Expect = 0.050 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILE 324 T L V N+ ++ LR++F+ +V V IP R K+SRGFAFV + DA+ ++ Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73 >gi|23121895|gb|ZP_00104030.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1378] Length = 221 Score = 40.0 bits (92), Expect = 0.050 Identities = 25/79 (31%), Positives = 43/79 (53%), Gaps = 2/79 (2%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEWF 326 + V N+PF+A+ +++ +LF +V +P++R+ + RGFAFVE A ++ Sbjct: 24 IFVGNLPFRAEREDILELFTPYGEVMNCSLPLERDTGRKRGFAFVEMADEALETSAIDGL 83 Query: 327 GVSTHLYGRRLVIEQSAER 345 T L GR L I ++ R Sbjct: 84 -QGTELMGRPLRINKAEPR 101 >gi|19569903|gb|AAL92217.1| PROTEIN LOCALIZED IN THE NUCLEOLI. 6/101 [Dictyostelium discoideum] Length = 299 Score = 40.0 bits (92), Expect = 0.050 Identities = 24/89 (26%), Positives = 43/89 (47%), Gaps = 3/89 (3%) Query: 255 STKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVEC 313 ++KP T +V +N+ F D +++ F + V +PV + + +GFAFV Sbjct: 150 NSKPSDGEGEPTTIVCRNIAFTVDETLVKEFFSKCGSISRVSLPVYEDSGRLKGFAFVSF 209 Query: 314 ASREDAQKILEWFGVSTHLYGRRLVIEQS 342 S + +K + G T GR + +E+S Sbjct: 210 DSEDAVEKAIALTG--TKFEGREIQVERS 236 >gi|22535673|dbj|BAC10847.1| putative splicing factor, arginine/serine-rich 2 (Splicing factor SC35) [Oryza sativa (japonica cultivar-group)] Length = 190 Score = 40.0 bits (92), Expect = 0.050 Identities = 22/58 (37%), Positives = 34/58 (57%), Gaps = 1/58 (1%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILE 324 L+V N+ F+ A +L LF+ +V + IP +R SRGFAFV ++AQK ++ Sbjct: 18 LLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVD 75 >gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic 5 [Callithrix jacchus] Length = 382 Score = 40.0 bits (92), Expect = 0.050 Identities = 26/85 (30%), Positives = 48/85 (55%), Gaps = 3/85 (3%) Query: 263 ATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQK- 321 AT T + VKN+ D ++L++LF ++V++ + +S+GF FV + E AQK Sbjct: 196 ATFTNVFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255 Query: 322 ILEWFGVSTHLYGRRLVIEQSAERI 346 +L+ G S G+ L + ++ ++I Sbjct: 256 VLDLHGKSVD--GKVLYVGRAQKKI 278 >gi|26327461|dbj|BAC27474.1| unnamed protein product [Mus musculus] Length = 707 Score = 40.0 bits (92), Expect = 0.050 Identities = 31/115 (26%), Positives = 57/115 (48%), Gaps = 19/115 (16%) Query: 225 SETVALLKFCSERDAMRCFKRMEKAEFLPLST-------------KPGKVAATSTK---L 268 S+ +A ++F SE DA + + + AE S + GK + S + L Sbjct: 430 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTL 489 Query: 269 VVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 V+ N+ + A + L ++F+ +K +P + + +G+AF+E AS EDA++ L Sbjct: 490 VLSNLSYSATKETLEEVFEKATFIK---VPQNPHGKPKGYAFIEFASFEDAKEAL 541 Score = 38.1 bits (87), Expect = 0.19 Identities = 22/65 (33%), Positives = 38/65 (57%), Gaps = 5/65 (7%) Query: 260 KVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDA 319 KV A T L+ KN+ F EL+++F+ +++ V ++ +S+G A++E S DA Sbjct: 390 KVRAART-LLAKNLSFNITEDELKEVFEDAMEIRLV----SQDGKSKGIAYIEFKSEADA 444 Query: 320 QKILE 324 +K LE Sbjct: 445 EKNLE 449 >gi|20466772|gb|AAM20703.1| putative splicing factor [Arabidopsis thaliana] Length = 420 Score = 39.7 bits (91), Expect = 0.065 Identities = 21/69 (30%), Positives = 35/69 (50%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G + + +L V N+ +LRK+F++ V+ V++P +GF FV+ A ED Sbjct: 137 GPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLED 196 Query: 319 AQKILEWFG 327 A+ L G Sbjct: 197 ARNALNLNG 205 >gi|20067397|emb|CAC84501.1| putative nucleolin [Triturus carnifex] Length = 338 Score = 39.7 bits (91), Expect = 0.065 Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 4/73 (5%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFG 327 +VVKN+ F+A L+ +F+ ++RIP + +S+GFA VE +++ A+K +E Sbjct: 121 VVVKNLAFKATESSLQNVFKNAV---SIRIPKDDSGRSQGFALVEYPNKKSARKAME-SH 176 Query: 328 VSTHLYGRRLVIE 340 + + GR + +E Sbjct: 177 KNVEIEGRHICLE 189 Score = 33.1 bits (74), Expect = 6.1 Identities = 22/79 (27%), Positives = 37/79 (45%), Gaps = 3/79 (3%) Query: 246 MEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQS 305 M +A+ S K K T L KN+P+ A +LRK+F+ ++ + + S Sbjct: 15 MARAQSYDSSIKTKK-ERTERILFAKNLPYSTTADDLRKVFENAVNIRI--LASNKKGTS 71 Query: 306 RGFAFVECASREDAQKILE 324 RG A +E S + + L+ Sbjct: 72 RGAASIEFKSAAETENALK 90 >gi|20804887|dbj|BAB92568.1| putative terminal ear1 [Oryza sativa (japonica cultivar-group)] Length = 683 Score = 39.7 bits (91), Expect = 0.065 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 6/100 (6%) Query: 249 AEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGF 308 A F ST P A+ + +V+ ++P + ELR++FQ VK VR R Sbjct: 206 AHFAAASTVPDDGASRGSLVVLNSLPAMS-VFELREIFQAYGDVKDVRESALRPSNK--- 261 Query: 309 AFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAERIFG 348 FVE DA + L L+GRRLV+E + + G Sbjct: 262 -FVEFFDTRDADRALHELN-GKELFGRRLVVEYTRPSLPG 299 >gi|7440062|pir||T06458 nucleolin homolog - garden pea gi|940288|gb|AAA74208.1| protein localized in the nucleoli of pea nuclei; ORF; putative Length = 611 Score = 39.7 bits (91), Expect = 0.065 Identities = 36/126 (28%), Positives = 56/126 (43%), Gaps = 5/126 (3%) Query: 212 ADLPAECETKIAPSETVALLKFCSERDAMRCFKRMEKAEFLPLSTKPGKVAATSTKLVVK 271 +D E E++ PS+T K + + + K +KA P + P + + T L V Sbjct: 306 SDSDEESESEDEPSKTPQ--KKTKDVEMIDADKSSKKAPATPAT--PSENGGSKT-LFVG 360 Query: 272 NVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFGVSTH 331 N+ F ++ FQ +V VR+ + + +GF VE A+ E AQ LE G Sbjct: 361 NLSFSVQRSDIESFFQECGEVVDVRLASDEDGRFKGFGHVEFATAEAAQSALELNGQELL 420 Query: 332 LYGRRL 337 G RL Sbjct: 421 QRGVRL 426 >gi|23040686|gb|ZP_00072187.1| hypothetical protein [Trichodesmium erythraeum IMS101] Length = 97 Score = 39.7 bits (91), Expect = 0.065 Identities = 22/67 (32%), Positives = 35/67 (51%), Gaps = 7/67 (10%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKIL--- 323 + V N+ + ++L ++F VK V++P R + RGF FVE +S E+ QK + Sbjct: 3 IYVGNLSYDVTQEDLSEVFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSEEEEQKAIDAL 62 Query: 324 ---EWFG 327 EW G Sbjct: 63 DSAEWMG 69 >gi|21553746|gb|AAM62839.1| putative splicing factor [Arabidopsis thaliana] Length = 560 Score = 39.7 bits (91), Expect = 0.065 Identities = 21/69 (30%), Positives = 35/69 (50%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G + + +L V N+ +LRK+F++ V+ V++P +GF FV+ A ED Sbjct: 278 GPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLED 337 Query: 319 AQKILEWFG 327 A+ L G Sbjct: 338 ARNALNLNG 346 >gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa] Length = 265 Score = 39.7 bits (91), Expect = 0.065 Identities = 30/96 (31%), Positives = 48/96 (49%), Gaps = 10/96 (10%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASRE 317 G+ + ++ V N+PF D+ +L LF+ V+ V + K +SRGF FV +S E Sbjct: 79 GEEFSDDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVE 138 Query: 318 DAQKILEWFGVSTHLYGRRLVI--------EQSAER 345 + + +E F L GR L + EQS++R Sbjct: 139 EVEAAVEQFN-GYILDGRSLRVNSGPPPPREQSSQR 173 >gi|18398260|ref|NP_565399.1| RRM-containing protein; protein id: At2g16940.1, supported by cDNA: 16224. [Arabidopsis thaliana] gi|20197280|gb|AAC64224.2| putative splicing factor [Arabidopsis thaliana] Length = 561 Score = 39.7 bits (91), Expect = 0.065 Identities = 21/69 (30%), Positives = 35/69 (50%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G + + +L V N+ +LRK+F++ V+ V++P +GF FV+ A ED Sbjct: 278 GPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLED 337 Query: 319 AQKILEWFG 327 A+ L G Sbjct: 338 ARNALNLNG 346 >gi|21357879|ref|NP_652170.1| CG10837 gene product [Drosophila melanogaster] gi|17946109|gb|AAL49096.1| RE54950p [Drosophila melanogaster] Length = 390 Score = 39.3 bits (90), Expect = 0.085 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 5/77 (6%) Query: 270 VKNVPFQADAQELRKLFQTKAQVKAVRIPVK--RNKQSRGFAFVECASREDAQKILEWFG 327 + N+PF A+ +L + F+ + ++R+P + N +SRGF +VE +RED +L Sbjct: 84 INNLPFDANEDDLYEFFEG-INLISLRLPREDGENGRSRGFGYVELENREDLIHVLSLPD 142 Query: 328 VSTHLYGRRLVIEQSAE 344 S + GRR+ IE S E Sbjct: 143 PS--IKGRRIRIELSNE 157 >gi|13435438|gb|AAH04587.1| Unknown (protein for IMAGE:3587950) [Mus musculus] Length = 527 Score = 39.3 bits (90), Expect = 0.085 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + +KN D + L++LF +V++ + +S+GF FV ED Sbjct: 75 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 134 Query: 319 AQKILEWFGVSTHLYGRRLVIEQSAERI 346 AQK ++ L G+++ + ++ +++ Sbjct: 135 AQKAVDEMN-GKELNGKQIYVGRAQKKV 161 >gi|1076509|pir||S49463 RNA-binding protein RNP1 precursor - kidney bean gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris] Length = 287 Score = 39.3 bits (90), Expect = 0.085 Identities = 21/61 (34%), Positives = 33/61 (53%), Gaps = 1/61 (1%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKIL 323 STKL N+P+ D+ +L L Q + + + R+ +SRGFAFV + ED ++ Sbjct: 112 STKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVI 171 Query: 324 E 324 E Sbjct: 172 E 172 >gi|19705459|ref|NP_599180.1| poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus] gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus] Length = 636 Score = 39.3 bits (90), Expect = 0.085 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + +KN D + L++LF +V++ + +S+GF FV ED Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243 Query: 319 AQKILEWFGVSTHLYGRRLVIEQSAERI 346 AQK ++ L G+++ + ++ +++ Sbjct: 244 AQKAVDEMN-GKELNGKQIYVGRAQKKV 270 >gi|6679197|ref|NP_032800.1| poly A binding protein, cytoplasmic 1; poly A binding protein 1 [Mus musculus] gi|129535|sp|P29341|PAB1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1) (PABP1) gi|2119041|pir||I48718 poly(A) binding protein - mouse gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus] Length = 636 Score = 39.3 bits (90), Expect = 0.085 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + +KN D + L++LF +V++ + +S+GF FV ED Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243 Query: 319 AQKILEWFGVSTHLYGRRLVIEQSAERI 346 AQK ++ L G+++ + ++ +++ Sbjct: 244 AQKAVDEMN-GKELNGKQIYVGRAQKKV 270 >gi|13278026|gb|AAH03870.1| poly A binding protein, cytoplasmic 1 [Mus musculus] gi|15029950|gb|AAH11207.1| poly A binding protein, cytoplasmic 1 [Mus musculus] gi|18606321|gb|AAH23145.1| poly A binding protein, cytoplasmic 1 [Mus musculus] gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus] Length = 636 Score = 39.3 bits (90), Expect = 0.085 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + +KN D + L++LF +V++ + +S+GF FV ED Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243 Query: 319 AQKILEWFGVSTHLYGRRLVIEQSAERI 346 AQK ++ L G+++ + ++ +++ Sbjct: 244 AQKAVDEMN-GKELNGKQIYVGRAQKKV 270 >gi|7289885|gb|AAF45484.1| CG10837 gene product [Drosophila melanogaster] Length = 507 Score = 39.3 bits (90), Expect = 0.085 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 5/77 (6%) Query: 270 VKNVPFQADAQELRKLFQTKAQVKAVRIPVK--RNKQSRGFAFVECASREDAQKILEWFG 327 + N+PF A+ +L + F+ + ++R+P + N +SRGF +VE +RED +L Sbjct: 279 INNLPFDANEDDLYEFFEG-INLISLRLPREDGENGRSRGFGYVELENREDLIHVLSLPD 337 Query: 328 VSTHLYGRRLVIEQSAE 344 S + GRR+ IE S E Sbjct: 338 PS--IKGRRIRIELSNE 352 >gi|15238140|ref|NP_196597.1| polyadenylate-binding protein II (PAB2), putative; protein id: At5g10350.1 [Arabidopsis thaliana] gi|11358793|pir||T50004 RNA binding protein-like - Arabidopsis thaliana gi|7671468|emb|CAB89408.1| RNA binding protein-like [Arabidopsis thaliana] Length = 217 Score = 39.3 bits (90), Expect = 0.085 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Query: 255 STKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECA 314 + + GK + + V NV + +E++ FQT V V I + + Q +GFA+VE Sbjct: 78 ANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFV 137 Query: 315 SREDAQKILEWFGVSTHLYGRRLVIEQSAERIFG 348 E Q+ L+ + L+GR+L + + G Sbjct: 138 EVEAVQEALQL--NESELHGRQLKVSPKRTNVPG 169 >gi|18425248|gb|AAL69426.1|AC098565_8 Putative RNA-binding protein [Oryza sativa] Length = 472 Score = 39.3 bits (90), Expect = 0.085 Identities = 20/70 (28%), Positives = 35/70 (49%) Query: 255 STKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECA 314 S+ AA + VKN+P A ++++++F+ +V V +P + R F FV A Sbjct: 276 SSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGFVHFA 335 Query: 315 SREDAQKILE 324 R A K ++ Sbjct: 336 ERSSALKAVK 345 Score = 33.5 bits (75), Expect = 4.7 Identities = 22/85 (25%), Positives = 43/85 (49%), Gaps = 4/85 (4%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILE 324 +++ + +P +L +L + ++ VR+ K K+++GFAFV ++ AQ+ +E Sbjct: 109 SEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQRAIE 168 Query: 325 WFGVSTHLYGR--RLVIEQSAERIF 347 H GR R + Q+ R+F Sbjct: 169 DLHDKEH-KGRTLRCSLSQAKHRLF 192 >gi|88405|pir||PS0381 polyadenylate-binding protein II - human (fragment) gi|1262583|dbj|BAA02244.1| human polyadenylate binding protein II [Homo sapiens] Length = 193 Score = 39.3 bits (90), Expect = 0.085 Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 T + +KN + D + L++LF + +V++ N +S+GF FV EDA K +E Sbjct: 2 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 60 >gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus] Length = 636 Score = 39.3 bits (90), Expect = 0.085 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + +KN D + L++LF +V++ + +S+GF FV ED Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243 Query: 319 AQKILEWFGVSTHLYGRRLVIEQSAERI 346 AQK ++ L G+++ + ++ +++ Sbjct: 244 AQKAVDEMN-GKELNGKQIYVGRAQKKV 270 >gi|9837439|gb|AAG00575.1|AF288041_1 splicing factor arginine/serine rich 2 [Oryzias latipes] Length = 211 Score = 39.3 bits (90), Expect = 0.085 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILE 324 L V N+ ++ + LR++F+ +V V IP R +K+SRGFAFV + DA+ ++ Sbjct: 2 LKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYSKESRGFAFVRFFDKRDAEDAMD 59 >gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum] Length = 649 Score = 38.9 bits (89), Expect = 0.11 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 13/104 (12%) Query: 231 LKFCSERDAMRCFKRMEKAEFLPLSTKPGKVAATST----------KLVVKNVPFQADAQ 280 + + + +DA R +E F PL KP ++ ++ + +KN+ D + Sbjct: 73 VNYGNPQDAARA---LEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHK 129 Query: 281 ELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 L F + + ++ V + QS+G+ FV+ S E AQK +E Sbjct: 130 ALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIE 173 Score = 34.7 bits (78), Expect = 2.1 Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 T + VKN+ +ELRK+F + +V + + +SR F FV + EDA + +E Sbjct: 206 TNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVE 264 >gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana] Length = 289 Score = 38.9 bits (89), Expect = 0.11 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 246 MEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQ 304 +E+ F ++ + + KL V N+PF D+ +L +LF++ V+ V + K + Sbjct: 71 VEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGR 130 Query: 305 SRGFAFVECASREDAQKILEWF 326 SRGF FV +S + + + F Sbjct: 131 SRGFGFVTMSSVSEVEAAAQQF 152 >gi|4803739|dbj|BAA77512.1| cold-inducible RNA-binding protein [Ciona intestinalis] Length = 158 Score = 38.9 bits (89), Expect = 0.11 Identities = 27/80 (33%), Positives = 41/80 (50%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEW 325 K+ V N+ + A +LRK F QV+ V I R +SRGFAFV +S +A +E Sbjct: 5 KVFVGNLSYNATEDDLRKHFSGSGQVEEVAIICDRETGRSRGFAFVTFSSEGEANDAIEN 64 Query: 326 FGVSTHLYGRRLVIEQSAER 345 S + GR + + Q+ + Sbjct: 65 LNES-DVAGRNVSVRQAQSK 83 >gi|17508567|ref|NP_493029.1| RNA recognition motif containing protein family member [Caenorhabditis elegans] gi|7506352|pir||T23960 hypothetical protein R06C1.4 - Caenorhabditis elegans gi|3878851|emb|CAB03222.1| Hypothetical protein R06C1.4 [Caenorhabditis elegans] Length = 84 Score = 38.9 bits (89), Expect = 0.11 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 261 VAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDA 319 +A+ + V NVP+Q +E+ F V VRI R + RGFAFVE + A Sbjct: 1 MASQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGA 60 Query: 320 QKILE 324 Q+ +E Sbjct: 61 QRAVE 65 >gi|5911800|emb|CAB56042.1| glycine rich RNA binding protein [Ciona intestinalis] Length = 162 Score = 38.9 bits (89), Expect = 0.11 Identities = 27/80 (33%), Positives = 41/80 (50%), Gaps = 2/80 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEW 325 K+ V N+ + A +LRK F QV+ V I R +SRGFAFV +S +A +E Sbjct: 5 KVFVGNLSYNATEDDLRKHFSGSGQVEEVAIICDRETGRSRGFAFVTFSSEGEANDAIEN 64 Query: 326 FGVSTHLYGRRLVIEQSAER 345 S + GR + + Q+ + Sbjct: 65 LNES-DVRGRNVSVRQAQSK 83 >gi|15228102|ref|NP_181259.1| chloroplast RNA-binding protein cp29, putative; protein id: At2g37220.1, supported by cDNA: 8849., supported by cDNA: gi_13877808, supported by cDNA: gi_15081716, supported by cDNA: gi_16323481 [Arabidopsis thaliana] gi|12230623|sp|Q9ZUU4|ROC1_ARATH Putative ribonucleoprotein At2g37220, chloroplast precursor gi|25386550|pir||A84790 probable RNA-binding protein [imported] - Arabidopsis thaliana gi|4056477|gb|AAC98043.1| putative RNA-binding protein [Arabidopsis thaliana] gi|13877809|gb|AAK43982.1|AF370167_1 putative RNA-binding protein [Arabidopsis thaliana] gi|15081717|gb|AAK82513.1| At2g37220/F3G5.1 [Arabidopsis thaliana] gi|16323482|gb|AAL15235.1| putative RNA-binding protein [Arabidopsis thaliana] gi|20197716|gb|AAM15222.1| putative RNA-binding protein [Arabidopsis thaliana] Length = 289 Score = 38.9 bits (89), Expect = 0.11 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 246 MEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQ 304 +E+ F ++ + + KL V N+PF D+ +L +LF++ V+ V + K + Sbjct: 71 VEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGR 130 Query: 305 SRGFAFVECASREDAQKILEWF 326 SRGF FV +S + + + F Sbjct: 131 SRGFGFVTMSSVSEVEAAAQQF 152 >gi|15822705|gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum] Length = 339 Score = 38.9 bits (89), Expect = 0.11 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 7/100 (7%) Query: 252 LPLSTKPGKVAAT-----STKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QS 305 L LS G + T S+KL V + + D L++ F +V R+ + R +S Sbjct: 21 LELSASNGSLFQTIRSMSSSKLFVGGLSYGTDESSLKETFSQYGEVIEARVILDRETGRS 80 Query: 306 RGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 RGF F+ S E+A ++ L+GRR+ + + E+ Sbjct: 81 RGFGFISFPSSEEATSAMQAMD-GQDLHGRRIKVNYATEK 119 >gi|998355|gb|AAA76605.1| colony 1 Length = 826 Score = 38.9 bits (89), Expect = 0.11 Identities = 17/54 (31%), Positives = 34/54 (62%) Query: 270 VKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKIL 323 +KN+P + D +E+ +L VK VR+ +SRG AFV+ ++++A++++ Sbjct: 481 IKNIPQEFDEKEIEQLVSKYGTVKRVRLLHNMAGRSRGSAFVDLETKDEAERVV 534 Score = 37.0 bits (84), Expect = 0.42 Identities = 35/111 (31%), Positives = 48/111 (42%), Gaps = 10/111 (9%) Query: 227 TVALLKFCSERDAMRCFKRMEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLF 286 TVAL++F S DA R K + T K AA T L V N P D + L +LF Sbjct: 350 TVALVEFRSVEDAQTALIRDGK--YFGDHTISVKEAAGIT-LYVTNFPPSTDDESLHRLF 406 Query: 287 QTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFGVSTHLYGRRL 337 + + +R P + R F +V E A K +T L+G+ L Sbjct: 407 GKSSNIFGIRWPSLKYNAHRRFCYVSFRDAESAAK-------ATGLHGKML 450 >gi|17538232|ref|NP_502136.1| RNA recognition motif containing protein (95.5 kD) [Caenorhabditis elegans] gi|7494726|pir||T18650 hypothetical protein B0035.12 - Caenorhabditis elegans gi|3873696|emb|CAA97405.1| Hypothetical protein B0035.12 [Caenorhabditis elegans] Length = 836 Score = 38.9 bits (89), Expect = 0.11 Identities = 21/56 (37%), Positives = 32/56 (56%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQK 321 +K+ V+NV FQA EL+ LF V +VR ++ + +G AFV+ + AQK Sbjct: 683 SKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQK 738 >gi|18415425|ref|NP_567594.1| RRM-containing protein; protein id: At4g20030.1, supported by cDNA: 251841. [Arabidopsis thaliana] Length = 152 Score = 38.9 bits (89), Expect = 0.11 Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFVECASREDAQKIL 323 ++K++V+N+PF L++ F ++ V+ I + K+S+G+AF++ S++DA + Sbjct: 39 ASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAI 98 Query: 324 EWFGVSTHLYGRRLV 338 E + +Y R++ Sbjct: 99 E--TMDRRMYNGRMI 111 >gi|11358671|pir||T47685 probable RNA binding protein - Arabidopsis thaliana gi|7076789|emb|CAB75904.1| putative RNA binding protein [Arabidopsis thaliana] Length = 309 Score = 38.5 bits (88), Expect = 0.14 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK-RNKQSRGFAFVECASRE 317 G+ ++ L+V+N+P +ELR+ F+ V+ V IP + Q RGFAFVE Sbjct: 40 GRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAY 99 Query: 318 DA 319 DA Sbjct: 100 DA 101 >gi|9843657|emb|CAC03602.1| SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana] Length = 262 Score = 38.5 bits (88), Expect = 0.14 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK-RNKQSRGFAFVECASRE 317 G+ ++ L+V+N+P +ELR+ F+ V+ V IP + Q RGFAFVE Sbjct: 40 GRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAY 99 Query: 318 DA 319 DA Sbjct: 100 DA 101 >gi|3183544|sp|P11940|PAB1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1) (PABP1) gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens] gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus] gi|16358990|gb|AAH15958.1|AAH15958 Unknown (protein for MGC:15290) [Homo sapiens] gi|23270713|gb|AAH23520.1| Unknown (protein for MGC:12727) [Homo sapiens] Length = 636 Score = 38.5 bits (88), Expect = 0.14 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + +KN D + L+ LF +V++ + +S+GF FV ED Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243 Query: 319 AQKILEWFGVSTHLYGRRLVIEQSAERI 346 AQK ++ L G+++ + ++ +++ Sbjct: 244 AQKAVDEMN-GKELNGKQIYVGRAQKKV 270 >gi|21667634|gb|AAM74138.1|AF497746_1 U-rich RNA-binding protein UBP-2 [Trypanosoma cruzi] Length = 166 Score = 38.5 bits (88), Expect = 0.14 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKIL 323 L+V +P D +LR+LF+ +++V+I R +QSRG+ FV+ S AQ+ + Sbjct: 31 LMVNYIPTTVDEVQLRQLFERYGPIESVKIVADRETRQSRGYGFVKFQSGSSAQQAI 87 >gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum] Length = 277 Score = 38.5 bits (88), Expect = 0.14 Identities = 24/83 (28%), Positives = 42/83 (49%), Gaps = 2/83 (2%) Query: 264 TSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKI 322 +S+KL V + + D L++ F V R+ + R+ +SRGF F+ S E+A Sbjct: 38 SSSKLFVGGLSYGTDESSLKEAFSQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASA 97 Query: 323 LEWFGVSTHLYGRRLVIEQSAER 345 L+ L+GRR+ + + E+ Sbjct: 98 LQAMD-GQDLHGRRIRVNYATEK 119 >gi|1084415|pir||S46286 RNA-binding protein - wood tobacco gi|624925|dbj|BAA05170.1| RNA-binding glycine rich protein (RGP-2) [Nicotiana sylvestris] Length = 259 Score = 38.5 bits (88), Expect = 0.14 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 264 TSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKI 322 +S+KL V + + D L++ F +V R+ + R+ +SRGF FV S E+A Sbjct: 38 SSSKLFVGGLSWGTDETSLKEAFSQHGEVIEARVIMDRDTGRSRGFGFVSFTSTEEAASA 97 Query: 323 LEWFGVSTHLYGRRLVIEQSAERIFG 348 L L+GR++ + + E++ G Sbjct: 98 LTALD-GQDLHGRQIRVNYATEKLRG 122 >gi|12084110|pdb|1FJE|B Chain B, Solution Structure Of Nucleolin Rbd12 In Complex With Snre Rna Length = 175 Score = 38.5 bits (88), Expect = 0.14 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 16/145 (11%) Query: 190 IYLDGLTGERSKTELIV--------RDFNVADLPAECETKIA--PSETVALLKFCSERDA 239 +++ L +S EL V D V D+ K E+ L+ E Sbjct: 16 LFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTG 75 Query: 240 MRCFKRMEKAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV 299 ++ F K E P KV A T L+ KN+ F EL+++F+ +++ V Sbjct: 76 LKVFGNEIKLE-KPKGRDSKKVRAART-LLAKNLSFNITEDELKEVFEDALEIRLV---- 129 Query: 300 KRNKQSRGFAFVECASREDAQKILE 324 ++ +S+G A++E S DA+K LE Sbjct: 130 SQDGKSKGIAYIEFKSEADAEKNLE 154 >gi|7485284|pir||T01563 hypothetical protein A_TM018A10.14 - Arabidopsis thaliana gi|2252863|gb|AAB62861.1| similar to nucleolin protein [Arabidopsis thaliana] gi|7267422|emb|CAB80892.1| putative protein [Arabidopsis thaliana] Length = 521 Score = 38.5 bits (88), Expect = 0.14 Identities = 28/74 (37%), Positives = 37/74 (49%), Gaps = 4/74 (5%) Query: 253 PLSTKPGKVAATSTK-LVVKNVPFQADAQELRKLFQTKAQV-KAVRIPVKRNKQSRGFAF 310 P S+ AA K L VKN+P ++L++LFQ +V K V P K K R F F Sbjct: 304 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGK--RDFGF 361 Query: 311 VECASREDAQKILE 324 V A R A K ++ Sbjct: 362 VHYAERSSALKAVK 375 >gi|18411454|ref|NP_567192.1| RRM-containing protein; protein id: At4g00830.1, supported by cDNA: gi_13605915 [Arabidopsis thaliana] gi|13605916|gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana] gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana] Length = 495 Score = 38.5 bits (88), Expect = 0.14 Identities = 28/74 (37%), Positives = 37/74 (49%), Gaps = 4/74 (5%) Query: 253 PLSTKPGKVAATSTK-LVVKNVPFQADAQELRKLFQTKAQV-KAVRIPVKRNKQSRGFAF 310 P S+ AA K L VKN+P ++L++LFQ +V K V P K K R F F Sbjct: 278 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGK--RDFGF 335 Query: 311 VECASREDAQKILE 324 V A R A K ++ Sbjct: 336 VHYAERSSALKAVK 349 >gi|12229876|sp|Q15097|PAB2_HUMAN Polyadenylate-binding protein 2 (Poly(A) binding protein 2) (PABP 2) gi|1082703|pir||S52491 polyadenylate binding protein II - human gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens] Length = 522 Score = 38.5 bits (88), Expect = 0.14 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + +KN D + L+ LF +V++ + +S+GF FV ED Sbjct: 159 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 218 Query: 319 AQKILEWFGVSTHLYGRRLVIEQSAERI 346 AQK ++ L G+++ + ++ +++ Sbjct: 219 AQKAVDEMN-GKELNGKQIYVGRAQKKV 245 >gi|11514582|pdb|1FJC|A Chain A, Solution Structure Of Nucleolin Rbd2 Length = 96 Score = 38.5 bits (88), Expect = 0.14 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 7/72 (9%) Query: 253 PLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVE 312 P ++K + A T L+ KN+ F EL+++F+ +++ V ++ +S+G A++E Sbjct: 7 PCTSKKVRAART---LLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIE 59 Query: 313 CASREDAQKILE 324 S DA+K LE Sbjct: 60 FKSEADAEKNLE 71 >gi|18410283|ref|NP_567021.1| arginine/serine-rich protein SCL30; protein id: At3g55460.1, supported by cDNA: 21694., supported by cDNA: gi_20466365 [Arabidopsis thaliana] gi|20466366|gb|AAM20500.1| putative RNA binding protein [Arabidopsis thaliana] gi|21554261|gb|AAM63336.1| putative RNA binding protein [Arabidopsis thaliana] gi|22136316|gb|AAM91236.1| putative RNA binding protein [Arabidopsis thaliana] Length = 262 Score = 38.5 bits (88), Expect = 0.14 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK-RNKQSRGFAFVECASRE 317 G+ ++ L+V+N+P +ELR+ F+ V+ V IP + Q RGFAFVE Sbjct: 40 GRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAY 99 Query: 318 DA 319 DA Sbjct: 100 DA 101 >gi|21302083|gb|EAA14228.1| agCP8848 [Anopheles gambiae str. PEST] Length = 187 Score = 38.5 bits (88), Expect = 0.14 Identities = 20/58 (34%), Positives = 35/58 (59%), Gaps = 1/58 (1%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRN-KQSRGFAFVECASREDAQKILE 324 L V N+ ++ +LR++F+ +V + IP R+ ++SRGFAFV + DA+ L+ Sbjct: 37 LKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRHTRESRGFAFVRFYDKRDAEDALD 94 >gi|23132713|gb|ZP_00114487.1| hypothetical protein [Synechococcus sp. WH 8102] Length = 214 Score = 38.5 bits (88), Expect = 0.14 Identities = 25/79 (31%), Positives = 42/79 (52%), Gaps = 2/79 (2%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEWF 326 + V N+PF+A+ +++ +LF +V +P++R+ + RGFAFVE A +E Sbjct: 3 IFVGNLPFRAEQEDVIELFAQFGEVANCALPLERDTGRKRGFAFVEMADEAVEDAAIEGL 62 Query: 327 GVSTHLYGRRLVIEQSAER 345 L GR L I ++ R Sbjct: 63 -QGAELMGRPLRINKAEPR 80 >gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum] Length = 289 Score = 38.5 bits (88), Expect = 0.14 Identities = 21/61 (34%), Positives = 33/61 (53%), Gaps = 1/61 (1%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILEW 325 K+ V N+PF D+ L +LF+ V+ V + K +SRGF FV +S+E + + Sbjct: 100 KIFVGNLPFSVDSAALAELFERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQ 159 Query: 326 F 326 F Sbjct: 160 F 160 Score = 34.7 bits (78), Expect = 2.1 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 264 TSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKI 322 +S ++ V N+ + D Q+L LF + +V ++ R+ +SRGF FV +S ++ Sbjct: 202 SSNRVYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDA 261 Query: 323 LE 324 +E Sbjct: 262 IE 263 >gi|21355069|ref|NP_650473.1| CG5213-PA [Drosophila melanogaster] gi|7300034|gb|AAF55205.1| CG5213-PA [Drosophila melanogaster] gi|19528057|gb|AAL90143.1| AT22957p [Drosophila melanogaster] Length = 251 Score = 38.5 bits (88), Expect = 0.14 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFVECAS 315 +P + +TS+ L V N+P D +++R+LF T + V + K N +SRG AF++ Sbjct: 118 RPSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFEL 177 Query: 316 REDAQ 320 DA+ Sbjct: 178 VRDAE 182 >gi|1350820|sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30) gi|280402|pir||S26203 RNA-binding protein 30 - curled-leaved tobacco gi|19708|emb|CAA46234.1| RNA binding protein 30 [Nicotiana plumbaginifolia] Length = 279 Score = 38.1 bits (87), Expect = 0.19 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILEW 325 K+ V N+ F AD+ L +LF+ V+ V + K +SRGF FV +S+E+ + + Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 326 FGVSTHLYGRRL 337 F L GR L Sbjct: 148 FN-GYELDGRAL 158 Score = 32.7 bits (73), Expect = 7.9 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 264 TSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKI 322 +S ++ V N+ + D L LF + +V ++ R+ +SRGF FV +S E+ Sbjct: 192 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNA 251 Query: 323 LE 324 +E Sbjct: 252 IE 253 >gi|9843653|emb|CAC03600.1| splicing factor SC35 [Arabidopsis thaliana] Length = 303 Score = 38.1 bits (87), Expect = 0.19 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILE 324 L+V N+ F+ A +L LF +V V IP +R SRGFAFV +++A K +E Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVE 75 >gi|1350821|sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31) gi|280403|pir||S26204 RNA-binding protein 31 - curled-leaved tobacco gi|19710|emb|CAA46233.1| RNA binding protein 31 [Nicotiana plumbaginifolia] Length = 292 Score = 38.1 bits (87), Expect = 0.19 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILEW 325 KL V N+PF D+ L LF+ V+ V + K + +SRGF FV +++E+ + + Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148 Query: 326 F 326 F Sbjct: 149 F 149 >gi|21553535|gb|AAM62628.1| ras-GTPase-activating protein SH3-domain binding protein-like [Arabidopsis thaliana] Length = 459 Score = 38.1 bits (87), Expect = 0.19 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFG 327 + V+N+PF + +L ++F+ +K I V+ NKQ F FVE + Q LE Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQGFCFGFVEFETSSGKQSALEASP 354 Query: 328 VSTHLYGRRLVIEQ 341 V+ + R+ V+E+ Sbjct: 355 VT--IGDRQAVVEE 366 >gi|15239490|ref|NP_200906.1| NTF2-containing RNA-binding protein, putative; protein id: At5g60980.1, supported by cDNA: 150047. [Arabidopsis thaliana] Length = 459 Score = 38.1 bits (87), Expect = 0.19 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFG 327 + V+N+PF + +L ++F+ +K I V+ NKQ F FVE + Q LE Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQGFCFGFVEFETSSGKQSALEASP 354 Query: 328 VSTHLYGRRLVIEQ 341 V+ + R+ V+E+ Sbjct: 355 VT--IGDRQAVVEE 366 >gi|17979131|gb|AAL49823.1| unknown protein [Arabidopsis thaliana] gi|20465339|gb|AAM20073.1| unknown protein [Arabidopsis thaliana] Length = 1007 Score = 38.1 bits (87), Expect = 0.19 Identities = 26/58 (44%), Positives = 32/58 (54%), Gaps = 1/58 (1%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFVECASREDAQKILE 324 LVV+ + AD + LR F A +K +R + K SRGFAFV S EDA K LE Sbjct: 434 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALE 491 >gi|15988386|pdb|1H6K|Z Chain Z, Nuclear Cap Binding Complex gi|20151224|pdb|1H6K|X Chain X, Nuclear Cap Binding Complex gi|20151225|pdb|1H6K|Y Chain Y, Nuclear Cap Binding Complex Length = 98 Score = 38.1 bits (87), Expect = 0.19 Identities = 19/66 (28%), Positives = 34/66 (50%) Query: 260 KVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDA 319 K+ S L V N+ F +++ +LF +K + + + + K + GF FVE SR DA Sbjct: 13 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKTACGFCFVEYYSRADA 72 Query: 320 QKILEW 325 + + + Sbjct: 73 ENAMRY 78 >gi|14091677|gb|AAK53819.1| RNA-binding protein UBP1 [Trypanosoma cruzi] Length = 224 Score = 38.1 bits (87), Expect = 0.19 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKIL 323 L+V +P D +LR+LF+ +++V+I R +QSRG+ FV+ S AQ+ + Sbjct: 45 LMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAI 101 >gi|19114289|ref|NP_593377.1| polyadenylate-binding protein [Schizosaccharomyces pombe] gi|3123239|sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A) binding protein) (PABP) gi|25756626|pir||DNZPPA polyadenylate-binding protein - fission yeast (Schizosaccharomyces pombe) gi|2104439|emb|CAB08762.1| poly(A) binding protein; polyadenylation factor [Schizosaccharomyces pombe] Length = 653 Score = 38.1 bits (87), Expect = 0.19 Identities = 20/69 (28%), Positives = 36/69 (51%) Query: 256 TKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECAS 315 +K + A T + +KN+ + QE LF ++ ++ + +N + RGF FV A+ Sbjct: 251 SKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYAN 310 Query: 316 REDAQKILE 324 E AQK ++ Sbjct: 311 HECAQKAVD 319 >gi|7506324|pir||T23934 hypothetical protein R05H10.2 - Caenorhabditis elegans Length = 406 Score = 38.1 bits (87), Expect = 0.19 Identities = 20/81 (24%), Positives = 43/81 (52%), Gaps = 3/81 (3%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRN--KQSRGFAFVECASREDAQKILE 324 +L+++N+PF+ ++L+ L + + +P R K GF F++ + DA+K E Sbjct: 96 RLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPSRKDPKTCAGFGFIQFVEKADAEKGRE 155 Query: 325 WFGVSTHLYGRRLVIEQSAER 345 +F + L GR + + + ++ Sbjct: 156 FFNTNKVL-GRSVAADWALDK 175 >gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform; PABPT [Mus musculus] Length = 603 Score = 38.1 bits (87), Expect = 0.19 Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 T + +KN + D + L LF Q+ +V++ +S+GF FV EDAQK ++ Sbjct: 166 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVD 224 >gi|15237641|ref|NP_201225.1| arginine/serine-rich splicing factor SC35; protein id: At5g64200.1, supported by cDNA: gi_17380867 [Arabidopsis thaliana] gi|17380868|gb|AAL36246.1| unknown protein [Arabidopsis thaliana] gi|21689657|gb|AAM67450.1| unknown protein [Arabidopsis thaliana] gi|22022546|gb|AAM83231.1| AT5g64200/MSJ1_4 [Arabidopsis thaliana] gi|23505861|gb|AAN28790.1| At5g64200/MSJ1_4 [Arabidopsis thaliana] Length = 303 Score = 38.1 bits (87), Expect = 0.19 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILE 324 L+V N+ F+ A +L LF +V V IP +R SRGFAFV +++A K +E Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVE 75 >gi|173421|gb|AAA35320.1| poly(A)-binding protein Length = 628 Score = 38.1 bits (87), Expect = 0.19 Identities = 20/69 (28%), Positives = 36/69 (51%) Query: 256 TKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECAS 315 +K + A T + +KN+ + QE LF ++ ++ + +N + RGF FV A+ Sbjct: 237 SKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYAN 296 Query: 316 REDAQKILE 324 E AQK ++ Sbjct: 297 HECAQKAVD 305 >gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2; poly A binding protein 2 [Mus musculus] gi|631748|pir||S44138 polyadenylate-binding protein, testis-enriched isoform - mouse gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus] Length = 628 Score = 38.1 bits (87), Expect = 0.19 Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 T + +KN + D + L LF Q+ +V++ +S+GF FV EDAQK ++ Sbjct: 191 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVD 249 >gi|24639833|ref|NP_511047.2| CG3312-PA [Drosophila melanogaster] gi|7290571|gb|AAF46022.1| CG3312-PA [Drosophila melanogaster] gi|16769448|gb|AAL28943.1| LD32008p [Drosophila melanogaster] Length = 941 Score = 38.1 bits (87), Expect = 0.19 Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQK 321 K+ V+N+ +EL +LF +K VR+ K NKQ +G A+VE +AQ+ Sbjct: 725 KIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQR 779 >gi|7417424|gb|AAF62554.1| nucleolin [Oncorhynchus mykiss] Length = 255 Score = 38.1 bits (87), Expect = 0.19 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 258 PGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRE 317 P + AA S L+V N+ + A L+ F+ ++R+P + N + +GFAFVE S E Sbjct: 198 PAQAAAESKTLIVNNLSYSATEDSLQSAFEGAV---SIRVP-QNNGRPKGFAFVEFESAE 253 Query: 318 DA 319 A Sbjct: 254 XA 255 Score = 38.1 bits (87), Expect = 0.19 Identities = 33/124 (26%), Positives = 56/124 (44%), Gaps = 4/124 (3%) Query: 200 SKTELIVRDFNVADLPAECETKIAPSETVALLKFCSERDAMRCFKRMEKAEFLPLSTKPG 259 SK L V+D + + A +E + + + M +M+KA S + Sbjct: 50 SKKNLEVQDVRLGASKKFGYVEFASAEDMQTAMELNGKKCMGQELKMDKARSKGNSQEEK 109 Query: 260 KVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDA 319 K T L VKN+PF A +L+++F A +RIP ++ +RG A++ + A Sbjct: 110 KDRDART-LFVKNLPFSATEDDLKEVF---ANAVEIRIPTGQDGSNRGIAYIAFKTEAMA 165 Query: 320 QKIL 323 K+L Sbjct: 166 DKML 169 >gi|15639347|ref|NP_218796.1| RNA-binding protein, putative [Treponema pallidum] gi|7428649|pir||B71334 probable RNA-binding protein - syphilis spirochete gi|3322634|gb|AAC65342.1| RNA-binding protein, putative [Treponema pallidum] Length = 105 Score = 38.1 bits (87), Expect = 0.19 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Query: 253 PLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFV 311 P++ + + S K+ V N+ + L LF +V +V I K ++S+GF FV Sbjct: 6 PIAVERRRFCVMSAKIYVGNLNYATTEAGLASLFSQFGEVLSVAVIKDKLTQRSKGFGFV 65 Query: 312 ECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 E S E A+ ++ GRRL + + E+ Sbjct: 66 EMESAESAELVINELN-EKEFEGRRLRVNYAEEK 98 >gi|2582672|emb|CAA75535.1| RNA binding protein [Drosophila melanogaster] Length = 943 Score = 38.1 bits (87), Expect = 0.19 Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQK 321 K+ V+N+ +EL +LF +K VR+ K NKQ +G A+VE +AQ+ Sbjct: 727 KIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQR 781 >gi|20160777|dbj|BAB89718.1| putative ribonucleoprotein [Oryza sativa (japonica cultivar-group)] gi|20161317|dbj|BAB90241.1| putative ribonucleoprotein [Oryza sativa (japonica cultivar-group)] Length = 460 Score = 38.1 bits (87), Expect = 0.19 Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFVECASRE 317 G S KL V VP EL +FQ A V V I K K SRG F+ C SRE Sbjct: 33 GGAEEESVKLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSRE 92 Query: 318 DAQK 321 +A K Sbjct: 93 EADK 96 >gi|15640189|ref|NP_229816.1| RNA-binding protein [Vibrio cholerae] gi|11356113|pir||D82358 RNA-binding protein VC0159 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi|9654560|gb|AAF93335.1| RNA-binding protein [Vibrio cholerae] Length = 152 Score = 38.1 bits (87), Expect = 0.19 Identities = 24/66 (36%), Positives = 41/66 (61%), Gaps = 2/66 (3%) Query: 254 LSTKPGKVAATSTK-LVVKNVPFQADAQELRKLFQTKAQVKAVRI-PVKRNKQSRGFAFV 311 LS+ + A+++TK L V N+P++A+ +++LF +V AVR+ KR + RGF FV Sbjct: 51 LSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFV 110 Query: 312 ECASRE 317 A+ + Sbjct: 111 VIAASQ 116 >gi|25146801|ref|NP_497077.2| RNA recognition motif containing protein (68.7 kD) [Caenorhabditis elegans] gi|21912363|emb|CAB05579.2| Hypothetical protein R05H10.2 [Caenorhabditis elegans] Length = 608 Score = 38.1 bits (87), Expect = 0.19 Identities = 20/81 (24%), Positives = 43/81 (52%), Gaps = 3/81 (3%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRN--KQSRGFAFVECASREDAQKILE 324 +L+++N+PF+ ++L+ L + + +P R K GF F++ + DA+K E Sbjct: 96 RLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPSRKDPKTCAGFGFIQFVEKADAEKGRE 155 Query: 325 WFGVSTHLYGRRLVIEQSAER 345 +F + L GR + + + ++ Sbjct: 156 FFNTNKVL-GRSVAADWALDK 175 >gi|15232464|ref|NP_190991.1| RRM-containing protein; protein id: At3g54230.1 [Arabidopsis thaliana] gi|11357594|pir||T47582 hypothetical protein F24B22.190 - Arabidopsis thaliana gi|6822069|emb|CAB70997.1| putative protein [Arabidopsis thaliana] Length = 1105 Score = 38.1 bits (87), Expect = 0.19 Identities = 26/58 (44%), Positives = 32/58 (54%), Gaps = 1/58 (1%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFVECASREDAQKILE 324 LVV+ + AD + LR F A +K +R + K SRGFAFV S EDA K LE Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALE 517 >gi|21312912|ref|NP_080502.1| RIKEN cDNA 4932702K14 [Mus musculus] gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus] gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus] Length = 643 Score = 38.1 bits (87), Expect = 0.19 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + +KN+ D + L+ LF +V++ + +S+GF FV ED Sbjct: 184 GARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHED 243 Query: 319 AQKILEWFGVSTHLYGRRLVIEQSAERI 346 A+K +E L G+++ + ++ +++ Sbjct: 244 ARKAVEEMN-GKDLNGKQIYVGRAQKKV 270 >gi|12002297|gb|AAG43284.1| unknown [Oryza sativa] Length = 131 Score = 38.1 bits (87), Expect = 0.19 Identities = 26/87 (29%), Positives = 44/87 (49%), Gaps = 2/87 (2%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK-RNKQSRGFAFVECASRE 317 G+ S L+V+N+P A++LR F+ V+ V +P + RGFAFVE Sbjct: 30 GRKEQGSGSLLVRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVEFVDPY 89 Query: 318 DAQKILEWFGVSTHLYGRRLVIEQSAE 344 DA + ++ ++GR + + +AE Sbjct: 90 DASE-AQYHMNRQVVFGREITVVLAAE 115 >gi|459650|gb|AAC46487.1| poly(A) binding protein gi|515321|gb|AAC46489.1| poly(A) binding protein gi|2854066|gb|AAC02537.1| poly(A)-binding protein [Trypanosoma cruzi] gi|2854068|gb|AAC02538.1| poly(A)-binding protein [Trypanosoma cruzi] Length = 550 Score = 37.7 bits (86), Expect = 0.25 Identities = 18/62 (29%), Positives = 31/62 (49%) Query: 258 PGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRE 317 P K + T +VVK +P D L+++F ++ A+ + N +SRG+A + E Sbjct: 88 PSKRRSGVTNIVVKKLPPSVDTYALKEMFSKYGRLTAIGLATNENGESRGYARISYEKEE 147 Query: 318 DA 319 A Sbjct: 148 SA 149 Score = 33.9 bits (76), Expect = 3.6 Identities = 18/59 (30%), Positives = 33/59 (55%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 T L VKN+ + ++L+++F +V + ++ Q+ GFA+V A+ E A K +E Sbjct: 184 TNLYVKNLDPSVNDEKLKEVFSAFGEVTSAKVRDLGANQTVGFAYVAYATHEAAAKAVE 242 >gi|23619592|ref|NP_705554.1| u1 small nuclear ribonucleoprotein, putative [Plasmodium falciparum 3D7] gi|23615799|emb|CAD52791.1| u1 small nuclear ribonucleoprotein, putative [Plasmodium falciparum 3D7] Length = 423 Score = 37.7 bits (86), Expect = 0.25 Identities = 20/76 (26%), Positives = 42/76 (54%), Gaps = 7/76 (9%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVE---CASREDAQKILE 324 L + + ++ Q+L+K F++ ++K V+I +N + RG+AF+E S DA K+ + Sbjct: 100 LFIGRLSYEVSEQKLKKEFESYGKIKTVKIIYDKNLKPRGYAFIEFEHTKSMNDAYKLAD 159 Query: 325 WFGVSTHLYGRRLVIE 340 + RR++++ Sbjct: 160 ----GKKIENRRILVD 171 >gi|100376|pir||S18883 ribonucleoprotein precursor - common tobacco (fragment) gi|20009|emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum] Length = 292 Score = 37.7 bits (86), Expect = 0.25 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILEW 325 +L V N+PF + +L ++F V V I R +SRGFAFV S E+A++ + Sbjct: 104 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 163 Query: 326 F 326 F Sbjct: 164 F 164 >gi|7446342|pir||S77714 RNA-binding protein precursor, 33K - wood tobacco gi|311952|emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris] Length = 319 Score = 37.7 bits (86), Expect = 0.25 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILEW 325 +L V N+PF + +L ++F V V I R +SRGFAFV S E+A++ + Sbjct: 110 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 169 Query: 326 F 326 F Sbjct: 170 F 170 >gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus] Length = 630 Score = 37.7 bits (86), Expect = 0.25 Identities = 27/91 (29%), Positives = 45/91 (48%), Gaps = 5/91 (5%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLF-QTKAQVKAVRIPVKRNKQSRGFAFVECASRE 317 G A T + +KN D + LR+ F Q + +V++ + +S+GF FV E Sbjct: 184 GAKAREFTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHE 243 Query: 318 DAQKILEWFGVSTHLYGRRLVI---EQSAER 345 DAQK ++ + L GR + + ++ AER Sbjct: 244 DAQKAVDEMN-TKELNGRAIYVGRAQKKAER 273 >gi|6226775|sp|O97018|SXL_CHRRU Sex-lethal protein homolog gi|25291016|gb|AAN74807.1| sex-lethal [Chrysomya rufifacies] Length = 307 Score = 37.7 bits (86), Expect = 0.25 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 10/103 (9%) Query: 229 ALLKFCSERDAMRCFKRME----KAEFLPLS-TKPGKVAATSTKLVVKNVPFQADAQELR 283 A + F SE DA K + + + L +S +PG + T L V N+P EL Sbjct: 129 AFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELE 188 Query: 284 KLFQTKAQVKAVRIPVKRNK---QSRGFAFVECASREDAQKIL 323 K+F + V+ + R+K + RG AFV RE+AQ+ + Sbjct: 189 KIFGKYGNI--VQKNILRDKLTGKPRGVAFVRFNKREEAQEAI 229 Score = 32.7 bits (73), Expect = 7.9 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK-RNKQSRGFAFVECASREDAQKILE 324 T L+V +P +EL LF+T + RI + S G+AFV+ AS DAQ ++ Sbjct: 85 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIK 144 >gi|133249|sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplast precursor gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco gi|20005|emb|CAA37879.1| 33 kDa ribonucleoprotein precursor [Nicotiana tabacum] Length = 324 Score = 37.7 bits (86), Expect = 0.25 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR-NKQSRGFAFVECASREDAQKILEW 325 +L V N+PF + +L ++F V V I R +SRGFAFV S E+A++ + Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174 Query: 326 F 326 F Sbjct: 175 F 175 >gi|13357168|gb|AAK20025.1|AF234183_1 sex-lethal protein SXL1 [Lucilia cuprina] Length = 324 Score = 37.7 bits (86), Expect = 0.25 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 10/103 (9%) Query: 229 ALLKFCSERDAMRCFKRME----KAEFLPLS-TKPGKVAATSTKLVVKNVPFQADAQELR 283 A + F SE DA K + + + L +S +PG + T L V N+P EL Sbjct: 146 AFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELE 205 Query: 284 KLFQTKAQVKAVRIPVKRNK---QSRGFAFVECASREDAQKIL 323 K+F + V+ + R+K + RG AFV RE+AQ+ + Sbjct: 206 KIFGKYGNI--VQKNILRDKLTGKPRGVAFVRFNKREEAQEAI 246 Score = 32.7 bits (73), Expect = 7.9 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK-RNKQSRGFAFVECASREDAQKILE 324 T L+V +P +EL LF+T + RI + S G+AFV+ AS DAQ ++ Sbjct: 102 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIK 161 >gi|585638|sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A) binding protein) (PABP) gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster] Length = 632 Score = 37.7 bits (86), Expect = 0.25 Identities = 22/103 (21%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 244 KRMEKAEFLPLSTKP-GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRN 302 K++ +F+P + G+ A T + VKN D ++L++ F+ ++ + ++ K + Sbjct: 158 KKVYVGKFIPRKEQELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKED 217 Query: 303 KQSRGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 +S+GF FV + E A+ ++ G+ L + ++ ++ Sbjct: 218 GKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKK 260 >gi|12230585|sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B) gi|100294|pir||S20070 ribonucleoprotein B, 29K - wood tobacco gi|14135|emb|CAA43428.1| 29kD B ribonucleoprotein [Nicotiana sylvestris] Length = 291 Score = 37.7 bits (86), Expect = 0.25 Identities = 21/61 (34%), Positives = 33/61 (53%), Gaps = 1/61 (1%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILEW 325 KL V N+PF D+ L LF+ V+ V + K +SRGF FV +++E+ + + Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147 Query: 326 F 326 F Sbjct: 148 F 148 >gi|418855|pir||S30887 polyadenylate-binding protein - fruit fly (Drosophila melanogaster) Length = 574 Score = 37.7 bits (86), Expect = 0.25 Identities = 22/103 (21%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 244 KRMEKAEFLPLSTKP-GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRN 302 K++ +F+P + G+ A T + VKN D ++L++ F+ ++ + ++ K + Sbjct: 158 KKVYVGKFIPRKEQELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKED 217 Query: 303 KQSRGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 +S+GF FV + E A+ ++ G+ L + ++ ++ Sbjct: 218 GKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKK 260 >gi|7446339|pir||T05730 probable RNA-binding protein cp33 precursor - barley gi|3550485|emb|CAA11894.1| cp33Hv [Hordeum vulgare subsp. vulgare] Length = 344 Score = 37.7 bits (86), Expect = 0.25 Identities = 23/61 (37%), Positives = 33/61 (53%), Gaps = 1/61 (1%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILEW 325 ++ V N+P+ A EL F V V+I K +SRGFAFV A+ E+A K ++ Sbjct: 109 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAVQM 168 Query: 326 F 326 F Sbjct: 169 F 169 >gi|13357170|gb|AAK20026.1|AF234184_1 sex-lethal protein SXL2 [Lucilia cuprina] Length = 325 Score = 37.7 bits (86), Expect = 0.25 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 10/103 (9%) Query: 229 ALLKFCSERDAMRCFKRME----KAEFLPLS-TKPGKVAATSTKLVVKNVPFQADAQELR 283 A + F SE DA K + + + L +S +PG + T L V N+P EL Sbjct: 146 AFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELE 205 Query: 284 KLFQTKAQVKAVRIPVKRNK---QSRGFAFVECASREDAQKIL 323 K+F + V+ + R+K + RG AFV RE+AQ+ + Sbjct: 206 KIFGKYGNI--VQKNILRDKLTGKPRGVAFVRFNKREEAQEAI 246 Score = 32.7 bits (73), Expect = 7.9 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK-RNKQSRGFAFVECASREDAQKILE 324 T L+V +P +EL LF+T + RI + S G+AFV+ AS DAQ ++ Sbjct: 102 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIK 161 >gi|23130748|gb|ZP_00112533.1| hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 199 Score = 37.7 bits (86), Expect = 0.25 Identities = 24/79 (30%), Positives = 42/79 (52%), Gaps = 2/79 (2%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEWF 326 + V N+PF+A+ +++ +LF +V +P++R+ + RGFAFVE A +E Sbjct: 3 IFVGNLPFRAEQEDVIELFAPFGEVANCALPLERDTGRKRGFAFVEMADESAEPAAIEAL 62 Query: 327 GVSTHLYGRRLVIEQSAER 345 + GR L I ++ R Sbjct: 63 -QGAEMMGRPLRINKAEPR 80 >gi|1438951|gb|AAB04133.1| cutinase negative acting protein Length = 507 Score = 37.7 bits (86), Expect = 0.25 Identities = 20/61 (32%), Positives = 34/61 (54%), Gaps = 1/61 (1%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQS-RGFAFVECASREDAQKIL 323 S L V N+P D +R+ F A+V +VR+P + + +GF +V S EDA+ ++ Sbjct: 355 SDTLFVGNLPIDVDQDAVREFFGEVAEVASVRLPTDPDSGNLKGFGYVSFNSVEDAKAVI 414 Query: 324 E 324 + Sbjct: 415 D 415 >gi|5052976|gb|AAD38787.1|AF153444_1 hnRNP A/B related protein [Felis catus] Length = 279 Score = 37.7 bits (86), Expect = 0.25 Identities = 37/165 (22%), Positives = 76/165 (45%), Gaps = 21/165 (12%) Query: 174 EAELVNRTRTFLESNAIYLDGLTGERSKTELIVRD-FNVADLPAECETKIAPSETVAL-L 231 E + +N ++ ++ +++ GL+ + SK +L +D F +C K+ P+ + Sbjct: 50 EGDQINASKNEEDAGKMFVGGLSWDTSKKDL--KDYFTKFGEVVDCTIKMVPNTGRSKGF 107 Query: 232 KFCSERDAMRCFKRMEKAEFLPLSTKPGKVAATSTKLVVKNVPF----------QADAQE 281 F +DA K +++ E G+V + +K P +A ++ Sbjct: 108 GFILFKDAASVEKVLDQKEH----RLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK 163 Query: 282 LRKLFQTKAQVKAVRIPV--KRNKQSRGFAFVECASREDAQKILE 324 +R+ F +++A+ +P+ K NK+ RGF F+ E +K+LE Sbjct: 164 IREYFGEFGEIEAIELPMDPKTNKR-RGFVFITFKEEEPVKKVLE 207 >gi|25071892|ref|XP_122209.2| similar to Polyadenylate-binding protein 4 (Poly(A) binding protein 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein-1) (APP-1) [Mus musculus] Length = 297 Score = 37.4 bits (85), Expect = 0.32 Identities = 20/66 (30%), Positives = 33/66 (49%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + +KN + D L++LF + +V++ + +SRGF FV ED Sbjct: 175 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHED 234 Query: 319 AQKILE 324 A K ++ Sbjct: 235 ANKAVD 240 >gi|24645618|ref|NP_649982.1| CG6241-PA [Drosophila melanogaster] gi|7299305|gb|AAF54500.1| CG6241-PA [Drosophila melanogaster] Length = 872 Score = 37.4 bits (85), Expect = 0.32 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%) Query: 69 IRCEVHRKIVFEAGCEEEALKRCGRVESIERGPRSVKVTFSKLFLDTLFDEVEKKTLRMA 128 + C+V F+ E E C + + R+V +T F DT +T+R Sbjct: 13 MHCDVCEGTTFQ---EREGFYYCVECGTQKDQIRAVDITAEDNFDDTAAGRYTARTIRQK 69 Query: 129 KSTERRDEKDM---EYFNTLFFDF-QKVLGKHNRAEVLAREAGVRVAYLEA 175 K TE+ DE D+ E++N + F Q++L + E+ V AYL++ Sbjct: 70 KDTEKEDEDDITSWEFYNYVLRGFLQELLNMGAKPELKLMTLQVWAAYLDS 120 >gi|15982706|gb|AAL09839.1| RNA binding protein [Bacteroides fragilis] Length = 80 Score = 37.4 bits (85), Expect = 0.32 Identities = 18/77 (23%), Positives = 46/77 (59%), Gaps = 2/77 (2%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRN-KQSRGFAFVECASREDAQKILEWF 326 + + N+ ++ +LR++ + V +V++ + R ++S+GFAFVE + ++A+ ++ Sbjct: 3 MYIGNLSYRVKEADLRQVMEEYGTVDSVKLIIDRETRKSKGFAFVEMPNDDEAKNVISEL 62 Query: 327 GVSTHLYGRRLVIEQSA 343 GR++V+++S+ Sbjct: 63 N-GAEYEGRQMVVKRSS 78 >gi|18700020|ref|NP_570951.1| similar to poly(A)-binding protein, cytoplasmic 4 (inducible form) [Mus musculus] gi|13096978|gb|AAH03283.1| Similar to poly(A)-binding protein, cytoplasmic 4 (inducible form) [Mus musculus] Length = 660 Score = 37.4 bits (85), Expect = 0.32 Identities = 20/66 (30%), Positives = 33/66 (49%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + +KN + D L++LF + +V++ + +S+GF FV ED Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHED 243 Query: 319 AQKILE 324 A K +E Sbjct: 244 ANKAVE 249 >gi|22507391|ref|NP_683717.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Mus musculus] gi|16307591|gb|AAH10345.1| Unknown (protein for MGC:11665) [Mus musculus] Length = 615 Score = 37.4 bits (85), Expect = 0.32 Identities = 20/66 (30%), Positives = 33/66 (49%) Query: 259 GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASRED 318 G A T + +KN + D L++LF + +V++ + +S+GF FV ED Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHED 243 Query: 319 AQKILE 324 A K +E Sbjct: 244 ANKAVE 249 >gi|15231200|ref|NP_190806.1| chloroplast RNA-binding protein cp33; protein id: At3g52380.1, supported by cDNA: 14246., supported by cDNA: gi_14517543, supported by cDNA: gi_17064757, supported by cDNA: gi_18700225 [Arabidopsis thaliana] gi|1076308|pir||S53494 RNA-binding protein cp33 precursor - Arabidopsis thaliana gi|681910|dbj|BAA06522.1| cp33 [Arabidopsis thaliana] gi|4886289|emb|CAB43448.1| RNA-binding protein cp33 precursor [Arabidopsis thaliana] gi|14517544|gb|AAK62662.1| AT3g52380/F22O6_240 [Arabidopsis thaliana] gi|18700226|gb|AAL77723.1| AT3g52380/F22O6_240 [Arabidopsis thaliana] gi|21553418|gb|AAM62511.1| RNA-binding protein cp33 [Arabidopsis thaliana] Length = 329 Score = 37.4 bits (85), Expect = 0.32 Identities = 24/74 (32%), Positives = 41/74 (54%), Gaps = 2/74 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILEW 325 +L V N+P+ + EL ++F V V+I K +SRGF FV S E+A++ ++ Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176 Query: 326 FGVSTHLYGRRLVI 339 F S+ + GR + + Sbjct: 177 FN-SSQIGGRTVKV 189 >gi|17136378|ref|NP_476667.1| CG5119-PA [Drosophila melanogaster] gi|24654793|ref|NP_725749.1| CG5119-PB [Drosophila melanogaster] gi|24654797|ref|NP_725750.1| CG5119-PC [Drosophila melanogaster] gi|24654800|ref|NP_725751.1| CG5119-PD [Drosophila melanogaster] gi|24654804|ref|NP_725752.1| CG5119-PE [Drosophila melanogaster] gi|24654807|ref|NP_725753.1| CG5119-PF [Drosophila melanogaster] gi|24654810|ref|NP_725754.1| CG5119-PG [Drosophila melanogaster] gi|7302665|gb|AAF57745.1| CG5119-PB [Drosophila melanogaster] gi|7302666|gb|AAF57746.1| CG5119-PC [Drosophila melanogaster] gi|7302667|gb|AAF57747.1| CG5119-PF [Drosophila melanogaster] gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster] gi|21626472|gb|AAM68175.1| CG5119-PA [Drosophila melanogaster] gi|21626473|gb|AAM68176.1| CG5119-PD [Drosophila melanogaster] gi|21626474|gb|AAM68177.1| CG5119-PE [Drosophila melanogaster] gi|21626475|gb|AAM68178.1| CG5119-PG [Drosophila melanogaster] Length = 634 Score = 37.4 bits (85), Expect = 0.32 Identities = 22/105 (20%), Positives = 52/105 (48%), Gaps = 3/105 (2%) Query: 244 KRMEKAEFLPLSTKP---GKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK 300 K++ +F+P + G+ A T + VKN D ++L++ F+ ++ + ++ K Sbjct: 158 KKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSK 217 Query: 301 RNKQSRGFAFVECASREDAQKILEWFGVSTHLYGRRLVIEQSAER 345 + +S+GF FV + E A+ ++ G+ L + ++ ++ Sbjct: 218 EDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKK 262 >gi|681912|dbj|BAA06523.1| cp33 [Arabidopsis thaliana] Length = 321 Score = 37.4 bits (85), Expect = 0.32 Identities = 24/74 (32%), Positives = 41/74 (54%), Gaps = 2/74 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPV-KRNKQSRGFAFVECASREDAQKILEW 325 +L V N+P+ + EL ++F V V+I K +SRGF FV S E+A++ ++ Sbjct: 109 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 168 Query: 326 FGVSTHLYGRRLVI 339 F S+ + GR + + Sbjct: 169 FN-SSQIGGRTVKV 181 >gi|21554348|gb|AAM63455.1| unknown [Arabidopsis thaliana] Length = 152 Score = 37.4 bits (85), Expect = 0.32 Identities = 19/75 (25%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 265 STKLVVKNVPFQADAQELRKLFQTKAQVKAVR-IPVKRNKQSRGFAFVECASREDAQKIL 323 ++K++V+N+PF L++ F ++ V+ I + ++S+G+AF++ S++DA + Sbjct: 39 ASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMQRSKGYAFIQFTSQDDAFLAI 98 Query: 324 EWFGVSTHLYGRRLV 338 E + +Y R++ Sbjct: 99 E--TMDRRMYNGRMI 111 >gi|20560400|ref|XP_061850.4| similar to 46kD arginine/serine-rich splicing factor [Homo sapiens] Length = 234 Score = 37.4 bits (85), Expect = 0.32 Identities = 21/54 (38%), Positives = 30/54 (54%), Gaps = 1/54 (1%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK-RNKQSRGFAFVECASREDAQ 320 L V N+ ++ LR++F+ +V V IP++ K RGFAFV R DAQ Sbjct: 16 LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEPHTKAPRGFAFVRFHDRSDAQ 69 >gi|4468620|emb|CAB38076.1| DAZ protein [Macaca fascicularis] Length = 817 Score = 37.4 bits (85), Expect = 0.32 Identities = 22/68 (32%), Positives = 34/68 (49%), Gaps = 3/68 (4%) Query: 270 VKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFGVS 329 V + + DA E++ F VK V+I R S+G+ FV + D QKI+E Sbjct: 269 VGGIDDRMDATEIKSFFGRYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVE---SQ 325 Query: 330 THLYGRRL 337 H+ G++L Sbjct: 326 IHIQGKKL 333 Score = 36.2 bits (82), Expect = 0.72 Identities = 22/68 (32%), Positives = 34/68 (49%), Gaps = 3/68 (4%) Query: 270 VKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFGVS 329 V + + DA E++ F VK V+I R S+G+ FV + D QKI+E Sbjct: 44 VGGIDDRMDATEIKSFFGRYGSVKEVKIITDRIGVSKGYGFVSFFNDVDVQKIVE---SQ 100 Query: 330 THLYGRRL 337 H+ G++L Sbjct: 101 IHIQGKKL 108 >gi|21288154|gb|EAA00475.1| agCP9314 [Anopheles gambiae str. PEST] Length = 634 Score = 37.4 bits (85), Expect = 0.32 Identities = 18/80 (22%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWF 326 +++V+N+ ++ ++LRK F+ +++ V I + + + G AF++ + RE++ K ++ Sbjct: 19 RIIVRNLSYKITEKKLRKEFERFGKLEEVNILKREDGKMVGCAFLQFSQREESDKAID-- 76 Query: 327 GVSTHLY-GRRLVIEQSAER 345 + H+Y GR++ ++ + ++ Sbjct: 77 EMDGHVYMGRKIGVQYAKDK 96 >gi|20975276|dbj|BAB92955.1| cold inducible RNA-binding protein alpha [Hyla japonica] Length = 162 Score = 37.4 bits (85), Expect = 0.32 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 267 KLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRN-KQSRGFAFVECASREDAQKILEW 325 KL V + F + Q L ++F Q+ V + R K+SRGF FV + EDA+ +E Sbjct: 8 KLFVGGLSFDTEEQSLEQVFGKYGQISEVVVVKDRETKRSRGFGFVTFENPEDAKDAMEA 67 Query: 326 FGVSTHLYGRRLVIEQSAE 344 + GR++ ++Q+ + Sbjct: 68 MN-GKSVDGRQIRVDQAGK 85 >gi|2565362|gb|AAB81985.1| Sex-lethal protein [Musca domestica] Length = 318 Score = 37.4 bits (85), Expect = 0.32 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 10/103 (9%) Query: 229 ALLKFCSERDAMRCFKRME----KAEFLPLS-TKPGKVAATSTKLVVKNVPFQADAQELR 283 A + F SE DA K + + + L +S +PG + T L V N+P EL Sbjct: 139 AFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELE 198 Query: 284 KLFQTKAQVKAVRIPVKRNK---QSRGFAFVECASREDAQKIL 323 K+F + V+ + R+K + RG AFV RE+AQ+ + Sbjct: 199 KIFGKYGNI--VQKNILRDKLTGRPRGVAFVRFNKREEAQEAI 239 Score = 34.3 bits (77), Expect = 2.7 Identities = 22/64 (34%), Positives = 32/64 (49%), Gaps = 1/64 (1%) Query: 262 AATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK-RNKQSRGFAFVECASREDAQ 320 A T L+V +P +EL LF+T + RI + S G+AFV+ AS DAQ Sbjct: 91 AVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQ 150 Query: 321 KILE 324 ++ Sbjct: 151 NAIK 154 >gi|6226777|sp|O17310|SXL_MUSDO Sex-lethal protein homolog gi|2565364|gb|AAB81986.1| Sex-lethal protein [Musca domestica] Length = 324 Score = 37.4 bits (85), Expect = 0.32 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 10/103 (9%) Query: 229 ALLKFCSERDAMRCFKRME----KAEFLPLS-TKPGKVAATSTKLVVKNVPFQADAQELR 283 A + F SE DA K + + + L +S +PG + T L V N+P EL Sbjct: 146 AFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELE 205 Query: 284 KLFQTKAQVKAVRIPVKRNK---QSRGFAFVECASREDAQKIL 323 K+F + V+ + R+K + RG AFV RE+AQ+ + Sbjct: 206 KIFGKYGNI--VQKNILRDKLTGRPRGVAFVRFNKREEAQEAI 246 Score = 34.3 bits (77), Expect = 2.7 Identities = 22/64 (34%), Positives = 32/64 (49%), Gaps = 1/64 (1%) Query: 262 AATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVK-RNKQSRGFAFVECASREDAQ 320 A T L+V +P +EL LF+T + RI + S G+AFV+ AS DAQ Sbjct: 98 AVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQ 157 Query: 321 KILE 324 ++ Sbjct: 158 NAIK 161 >gi|23042232|gb|ZP_00073633.1| hypothetical protein [Trichodesmium erythraeum IMS101] Length = 89 Score = 37.4 bits (85), Expect = 0.32 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 270 VKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASREDAQKILEWFGV 328 V N+ + A ++L+ F VK V++P R + RGFAFVE S ++ +E Sbjct: 5 VGNLSYDATDEDLKTAFAKYGNVKRVQVPNDRETGRPRGFAFVEMESEDEETAAIEGLD- 63 Query: 329 STHLYGRRLVIEQSAER 345 + L GR L + ++ R Sbjct: 64 GSELMGRILKVNKARPR 80 >gi|23123195|gb|ZP_00105330.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1378] Length = 92 Score = 37.0 bits (84), Expect = 0.42 Identities = 20/67 (29%), Positives = 37/67 (54%), Gaps = 7/67 (10%) Query: 268 LVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNK-QSRGFAFVECASRE------DAQ 320 + + N+ ++ + ++L+ LF+T V+ IP++R+ + RGF FVE S D Sbjct: 3 IFIGNLSWKTEEEDLKDLFKTYGAVRNCTIPLERDSGRKRGFGFVEMTSESSEKTAIDDL 62 Query: 321 KILEWFG 327 + +EW G Sbjct: 63 QDVEWMG 69 >gi|3265050|gb|AAC72068.1| DAZ protein [Papio cynocephalus anubis] Length = 121 Score = 37.0 bits (84), Expect = 0.42 Identities = 22/68 (32%), Positives = 34/68 (49%), Gaps = 3/68 (4%) Query: 270 VKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILEWFGVS 329 V + + DA E++ F VK V+I R S+G+ FV + D QKI+E Sbjct: 37 VGGIDDRMDATEIKSCFGRYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVE---SQ 93 Query: 330 THLYGRRL 337 H+ G++L Sbjct: 94 IHIQGKKL 101 >gi|15010818|dbj|BAB62188.1| JKTBP1delta6 [Homo sapiens] Length = 244 Score = 37.0 bits (84), Expect = 0.42 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 14/164 (8%) Query: 172 YLEAELVNRTRTFLESNAIYLDGLTGERSK---TELIVRDFNVADLPAECETKIAPSETV 228 + E +N ++ + +++ GL+ + SK TE + R V D + + S Sbjct: 13 FAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGF 72 Query: 229 ALLKFCSERDAMRCFKRMEKAEFL-------PLSTKPGKVAATSTKLVVKNVPFQADAQE 281 + F +DA K +E E P K K K+ V + ++ Sbjct: 73 GFVLF---KDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQ 129 Query: 282 LRKLFQTKAQVKAVRIPVK-RNKQSRGFAFVECASREDAQKILE 324 +++ F +++ + +P+ + + RGF F+ E +K+LE Sbjct: 130 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173 >gi|23508928|ref|NP_701596.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7] gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7] Length = 875 Score = 37.0 bits (84), Expect = 0.42 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 248 KAEFLPLSTKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRG 307 KA+F L+ + K L +KN+ D LR+LF+ + + ++ +QS+G Sbjct: 433 KAKFDNLNVE-NKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKG 491 Query: 308 FAFVECASREDAQK 321 F FV AS+E+A K Sbjct: 492 FGFVCFASQEEANK 505 Score = 32.7 bits (73), Expect = 7.9 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Query: 266 TKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECASREDAQKILE 324 T L VKN P LR+LF ++ + + VK + ++R F F+ A E A+ ++ Sbjct: 193 TNLYVKNFPDSVTETHLRQLFNPYGEITS--MIVKMDNKNRKFCFINYADAESAKNAMD 249 >gi|7710036|ref|NP_057899.1| heterogeneous nuclear ribonucleoprotein D-like; expressed sequence AA959857 [Mus musculus] gi|4514631|dbj|BAA75479.1| JKTBP [Mus musculus] gi|18203892|gb|AAH21374.1| heterogeneous nuclear ribonucleoprotein D-like [Mus musculus] Length = 301 Score = 37.0 bits (84), Expect = 0.42 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 14/164 (8%) Query: 172 YLEAELVNRTRTFLESNAIYLDGLTGERSK---TELIVRDFNVADLPAECETKIAPSETV 228 + E +N ++ + +++ GL+ + SK TE + R V D + + S Sbjct: 13 FAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGF 72 Query: 229 ALLKFCSERDAMRCFKRMEKAEFL-------PLSTKPGKVAATSTKLVVKNVPFQADAQE 281 + F +DA K +E E P K K K+ V + ++ Sbjct: 73 GFVLF---KDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQ 129 Query: 282 LRKLFQTKAQVKAVRIPVK-RNKQSRGFAFVECASREDAQKILE 324 +++ F +++ + +P+ + + RGF F+ E +K+LE Sbjct: 130 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173 >gi|12643556|sp|O43251|RBM9_HUMAN Putative RNA-binding protein 9 (RNA binding motif protein 9) Length = 391 Score = 37.0 bits (84), Expect = 0.42 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 255 STKPGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKRNKQSRGFAFVECA 314 S++ + +T +L V N+PF+ +LR++F ++ V I + + S+GF FV Sbjct: 101 SSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI-IFNERGSKGFGFVTFE 159 Query: 315 SREDAQKILEWFGVSTHLYGRRLVIEQSAERI 346 + DA + E T + GR++ + + R+ Sbjct: 160 NSADADRAREKLH-GTVVEGRKIEVNNATARV 190 >gi|14110404|ref|NP_112556.1| heterogeneous nuclear ribonucleoprotein AB isoform a; hnRNP type A/B protein; apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1-binding protein 1; apobec-1 binding protein 1; heterogeneous nuclear ribonucleoprotein C; HNRNP core protein C [Homo sapiens] gi|1814274|gb|AAC50956.1| ABBP-1 [Homo sapiens] Length = 331 Score = 37.0 bits (84), Expect = 0.42 Identities = 41/173 (23%), Positives = 78/173 (44%), Gaps = 22/173 (12%) Query: 166 AGVRVAYLEAELVNRTRTFLESNAIYLDGLTGERSKTELIVRDF-----NVADLPAECET 220 AG+R A + +N ++ ++ +++ GL+ + SK +L +D+ V D + + Sbjct: 48 AGIRTA--PRDQINASKNEEDAGKMFVGGLSWDTSKKDL--KDYFTKFGEVVDCTIKMDP 103 Query: 221 KIAPSETVALLKFCSERDAMRCFKRMEKAEF-LPLSTKPGKVAATSTKLVVKNV------ 273 S + F +DA K +++ E L K A K VK + Sbjct: 104 NTGRSRGFGFILF---KDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLN 160 Query: 274 PFQADAQELRKLFQTKAQVKAVRIPV--KRNKQSRGFAFVECASREDAQKILE 324 P +++R+ F +++A+ +P+ K NK+ RGF F+ E +K+LE Sbjct: 161 PESPTEEKIREYFGEFGEIEAIELPMDPKLNKR-RGFVFITFKEEEPVKKVLE 212 >gi|21536244|ref|NP_598686.1| RIKEN cDNA 4930471K13 [Mus musculus] gi|17390870|gb|AAH18373.1| Unknown (protein for MGC:12075) [Mus musculus] Length = 575 Score = 37.0 bits (84), Expect = 0.42 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Query: 257 KPGKVAATSTKLVVKNVPFQADAQELRKLF-QTKAQVKAVRIPV------------KRNK 303 K + + T+L + N+P D ++LRKL + K VRI K Sbjct: 293 KNQNIFVSQTRLCLHNLPKAVDDKQLRKLLLEATRGEKGVRIKECRVMRDLKGVHGKMKG 352 Query: 304 QSRGFAFVECASREDAQKILEWFGVSTHLYG--RRLVIEQSAE 344 QS G+AF E E A + L F + ++G +R ++E S E Sbjct: 353 QSLGYAFAEFQKHEHALRALRHFNNNPEIFGSQKRPIVEFSLE 395 Score = 35.0 bits (79), Expect = 1.6 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 12/110 (10%) Query: 247 EKAEFLPLSTK-----PGKVAATSTKLVVKNVPFQADAQELRKLFQTKAQVKAVRIPVKR 301 ++ E +P+S K P V T + ++N+ F ++ + L ++ Q +K VR+ + Sbjct: 127 QEDEDVPVSEKKKRKLPSDVTEGKT-VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP 185 Query: 302 NKQ-SRGFAFVECASREDAQKI-----LEWFGVSTHLYGRRLVIEQSAER 345 + + S+G AF + ++E AQK LE G L GR+L ++ + R Sbjct: 186 DTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR 235 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Dec 22, 2002 5:04 AM Number of letters in database: 405,910,324 Number of sequences in database: 1,269,806 Lambda K H 0.323 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 234,911,820 Number of Sequences: 1269806 Number of extensions: 8607660 Number of successful extensions: 24067 Number of sequences better than 10.0: 592 Number of HSP's better than 10.0 without gapping: 207 Number of HSP's successfully gapped in prelim test: 388 Number of HSP's that attempted gapping in prelim test: 23339 Number of HSP's gapped (non-prelim): 966 length of query: 349 length of database: 405,910,324 effective HSP length: 123 effective length of query: 226 effective length of database: 249,724,186 effective search space: 56437666036 effective search space used: 56437666036 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 73 (32.7 bits)