>contig_25_6876:8327 [translation frame +1] MSFIKTAAQPMKKLFGERQKYVIGRIKKNFVHTYSKRYPVELPFSCTGDV MVCITASGAEIFFEHTIFNSYVVSVEENVYVLHGKKLTFMTKDEEVLEKD KIYIFEITEETFAYKKVRLYKKNVYQGRYRKGKFLYEVPETLSEKVTEDA ANRPRRVLTGTLIVQRNHKENDMVTAEQVSDNVFVETGCPLREVRGRIIA TNPHIIVQDGAISVMVLEKSTTVQKGELVTVRVLDETFGRYVGTLRRFDI KVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGVVYKVD EDKQQFEFSVKRYLKMARENELEEALISLPFTEADGEGCTEIPVTDACRS EASAHAEAAVCESAKRRKTHAAHRPGFGRYLSELVSSEIRAASDGDANRG GFSLKGLGKEIQCNMTYDEVMDVINAHLDKKGVGAIFEALVEADWGVERM REIFKKWMAYEKANSGDVERVKCMAKQYVQQISR BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= contig_25_6876:8327 [translation frame +1] (484 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 1,269,806 sequences; 405,910,324 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|19074309|ref|NP_585815.1| hypothetical protein [Encephalitozo... 69 1e-10 gi|23108509|gb|ZP_00094729.1| hypothetical protein [Novosphingob... 41 0.035 gi|22999139|gb|ZP_00043139.1| hypothetical protein [Magnetococcu... 40 0.10 gi|25395802|pir||E88481 protein C16A3.2 [imported] - Caenorhabdi... 39 0.17 gi|20544347|ref|XP_031992.7| similar to RRP5 protein homolog [Ho... 39 0.17 gi|2498864|sp|Q14690|RRP5_HUMAN RRP5 protein homolog >gi|1136430... 39 0.17 gi|17552198|ref|NP_498398.1| S1 RNA binding domain containing pr... 39 0.17 gi|15794409|ref|NP_284231.1| 30S ribosomal protein S1 [Neisseria... 39 0.22 gi|19075390|ref|NP_587890.1| putative rRNA biogenesis protein; r... 39 0.22 gi|15677167|ref|NP_274320.1| 30S ribosomal protein S1 [Neisseria... 39 0.22 gi|15892670|ref|NP_360384.1| 30S ribosomal protein S1 [Rickettsi... 37 0.50 gi|27229162|ref|NP_082911.1| programmed cell death protein 11; p... 37 0.65 gi|20890036|ref|XP_129286.1| programmed cell death protein 11 [M... 37 0.65 gi|16079345|ref|NP_390169.1| alternate gene name: jofD~similar t... 37 0.85 gi|22962061|gb|ZP_00009667.1| hypothetical protein [Rhodopseudom... 37 0.85 gi|21961225|gb|AAH34528.1| Similar to serine (or cysteine) prote... 37 0.85 gi|4505791|ref|NP_002631.1| serine (or cysteine) proteinase inhi... 37 0.85 gi|15604379|ref|NP_220895.1| 30S RIBOSOMAL PROTEIN S1 (rpsA) [Ri... 36 1.1 gi|22977358|gb|ZP_00023167.1| hypothetical protein [Ralstonia me... 36 1.1 gi|13508497|gb|AAF15293.3|AAF15293 erythrocyte membrane-associat... 36 1.1 gi|17937799|ref|NP_534588.1| 30S ribosomal protein S1 [Agrobacte... 36 1.1 gi|15890870|ref|NP_356542.1| AGR_L_1496p [Agrobacterium tumefaci... 36 1.1 gi|23508683|ref|NP_701352.1| antigen 332, putative [Plasmodium f... 36 1.1 gi|22984325|gb|ZP_00029476.1| hypothetical protein [Burkholderia... 36 1.1 gi|17545628|ref|NP_519030.1| PROBABLE 30S RIBOSOMAL SUBUNIT PROT... 36 1.1 gi|22955798|gb|ZP_00003599.1| hypothetical protein [Nitrosomonas... 36 1.1 gi|23015735|gb|ZP_00055503.1| hypothetical protein [Magnetospiri... 36 1.5 gi|20533391|ref|XP_115686.1| similar to RIKEN cDNA 2010300C02 ge... 36 1.5 gi|9366654|emb|CAB95416.1| rRNA biogenesis protein, possible [Tr... 36 1.5 gi|19554025|ref|NP_602027.1| putative membrane protease subunit ... 36 1.5 gi|21673127|ref|NP_661192.1| ribosomal protein S1 [Chlorobium te... 36 1.5 gi|23005827|gb|ZP_00048451.1| hypothetical protein [Magnetospiri... 35 1.9 gi|243180|gb|AAB21091.1| ribosomal protein S4 [Bacillus stearoth... 35 1.9 gi|26454648|sp|P81288|RS4_BACST 30S ribosomal protein S4 35 1.9 gi|21223411|ref|NP_629190.1| putative integral membrane protein ... 35 1.9 gi|15895122|ref|NP_348471.1| Fusion Penicillin tolerance LytB do... 35 2.5 gi|7510752|pir||T32546 hypothetical protein ZC416.6 - Caenorhabd... 35 2.5 gi|17544504|ref|NP_500385.1| Leukotriene 4 hydrolase (71.3 kD) [... 35 2.5 gi|7245451|pdb|1EG0|A Chain A, Fitting Of Components With Known ... 35 3.2 gi|23500942|ref|NP_697069.1| ribosomal protein S1 [Brucella suis... 35 3.2 gi|19112200|ref|NP_595408.1| carboxypeptidase precursor [Schizos... 35 3.2 gi|15964008|ref|NP_384361.1| 30S RIBOSOMAL PROTEIN S1 [Sinorhizo... 35 3.2 gi|70848|pir||R3ZR1 ribosomal protein S1 - Rhizobium meliloti >g... 35 3.2 gi|13474344|ref|NP_105912.1| ribosomal protein S1 [Mesorhizobium... 35 3.2 gi|17988198|ref|NP_540832.1| SSU ribosomal protein S1P [Brucella... 35 3.2 gi|23026655|gb|ZP_00065128.1| hypothetical protein [Microbulbife... 34 5.5 gi|10998136|dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Ar... 34 5.5 gi|17230699|ref|NP_487247.1| serine/threonine kinase [Nostoc sp.... 34 5.5 gi|23024286|gb|ZP_00063503.1| hypothetical protein [Leuconostoc ... 34 5.5 gi|16768960|gb|AAL28699.1| LD12377p [Drosophila melanogaster] 34 5.5 gi|15229915|ref|NP_187803.1| hypothetical protein; protein id: A... 34 5.5 gi|6671953|gb|AAF23213.1|AC016795_26 putative pre-rRNA processin... 34 5.5 gi|7481586|pir||T35989 probable translation initiation factor - ... 33 7.2 gi|3122814|sp|O06000|RS1H_BACCE 30S RIBOSOMAL PROTEIN S1 HOMOLOG... 33 7.2 gi|2495190|sp|P80960|RTA_RAPTH Hemocyanin (RTA) 33 7.2 gi|24413891|emb|CAD55362.1| probable translational initiation fa... 33 7.2 gi|16127817|ref|NP_422381.1| ribosomal protein S1 [Caulobacter c... 33 7.2 gi|22966595|gb|ZP_00014191.1| hypothetical protein [Rhodospirill... 33 7.2 gi|3550606|emb|CAA05850.1| dihydrofolate reductase-thymidylate s... 33 7.2 gi|21399415|ref|NP_655400.1| S1, S1 RNA binding domain [Bacillus... 33 7.2 gi|42900|emb|CAA23644.1| S1 ribosomal protein [Escherichia coli] 33 9.4 gi|16121672|ref|NP_404985.1| 30S ribosomal protein S1 [Yersinia ... 33 9.4 gi|15800772|ref|NP_286786.1| 30S ribosomal subunit protein S1 [E... 33 9.4 gi|16759851|ref|NP_455468.1| 30S ribosomal protein S1 [Salmonell... 33 9.4 gi|223404|prf||0804233A protein S1 33 9.4 gi|133870|sp|P14128|RS1_PROSP 30S ribosomal protein S1 >gi|89779... 33 9.4 gi|42837|emb|CAA23630.1| reading frame S1 [Escherichia coli] 33 9.4 gi|10955106|ref|NP_059762.1| repA [Agrobacterium tumefaciens] >g... 33 9.4 >gi|19074309|ref|NP_585815.1| hypothetical protein [Encephalitozoon cuniculi] gi|19068951|emb|CAD25419.1| hypothetical protein [Encephalitozoon cuniculi] Length = 582 Score = 69.3 bits (168), Expect = 1e-10 Identities = 82/330 (24%), Positives = 150/330 (44%), Gaps = 28/330 (8%) Query: 13 KLFGERQKYVIGRIKKNFVHTYSKRYPVELPFSCTGDVMVCITASGAEIFFEHTIFXXXX 72 KLFG+ Y+ GRI T S Y +E P S + A EIF+ +IF Sbjct: 2 KLFGQESTYLYGRILNRKFITPSGSYEIE-PLSMATGMHPVRHAGKIEIFYVSSIFNSYL 60 Query: 73 XXXXXXXXXLHGK--KLTFMTKDEEVLEKDKIYIFEITEETFAYKKVRLYK-KNVYQGRY 129 L K+T +T+DE ++KD +Y F + +ET + +YK Y G Sbjct: 61 VSSEENVNVLFSADGKVT-ITRDE--VDKDVLYTFRVVKETNELRIAEIYKFDTFYPGFK 117 Query: 130 RKGKFLYEVPETLSEKVTEDAANRPRRVLTGTLIVQRNHKEN--DMVTAEQVSDNVFVET 187 G+ + + +K + + R +GTL++Q N ++ ++V ++ + FV+ Sbjct: 118 TSGEVKWRL-----DKDGKRIYSVETRYGSGTLLLQNNDVKDTVNVVLYKKDRELHFVQV 172 Query: 188 GCPLR---EVRGRIIATNPHIIVQDGAISVMVLEKSTTVQKGELVTVRVLDETFGRYVGT 244 P+ ++ ++ N + V+D + ++ S + G++V V + G Y+ Sbjct: 173 DDPIGGVVKMTVTVVMANNNYGVRDRNVRGFLI-TSNRYKVGDVVACMVKEICLGNYL-F 230 Query: 245 LRRFDIKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKY---VRGVVYKVDE 301 + ++++G V +A +++ +E SG M + E S +Y VRGVVY + + Sbjct: 231 VEHVELRIGSVVEARIKDYGKSRIQLEYGSHSGYMPMEE--SARRRYGGHVRGVVYDIRD 288 Query: 302 DKQQFEFSVKRYLKMARENELEEALISLPF 331 F S KR + E++ +E +S+PF Sbjct: 289 G--VFLMSTKRMCVL--EDDCKEVDLSVPF 314 Score = 52.4 bits (124), Expect = 1e-05 Identities = 20/47 (42%), Positives = 32/47 (67%) Query: 436 IFEALVEADWGVERMREIFKKWMAYEKANSGDVERVKCMAKQYVQQI 482 ++ +VE W + M+E +K W+ YEK N+G++E VK AK+YV+ I Sbjct: 530 LYRRVVEKKWRIGDMKEFYKMWLEYEKENNGNIEEVKLRAKEYVESI 576 >gi|23108509|gb|ZP_00094729.1| hypothetical protein [Novosphingobium aromaticivorans] Length = 566 Score = 41.2 bits (95), Expect = 0.035 Identities = 27/101 (26%), Positives = 52/101 (50%), Gaps = 13/101 (12%) Query: 224 QKGELVTVR--VLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGISGRMKL 281 ++G +V R VL+ET L + ++K G + D +V+NITD AFV++ GI G + + Sbjct: 169 RRGNIVVSRRAVLEETRAEQRSGLIQ-NLKEGQIIDGVVKNITDYGAFVDLGGIDGLLHV 227 Query: 282 NECNSINTKY----------VRGVVYKVDEDKQQFEFSVKR 312 + + + VR + ++++D Q+ +K+ Sbjct: 228 TDMSYKRVNHPSEVIAIGDTVRVQIIRINQDTQRISLGMKQ 268 >gi|22999139|gb|ZP_00043139.1| hypothetical protein [Magnetococcus sp. MC-1] Length = 570 Score = 39.7 bits (91), Expect = 0.10 Identities = 22/72 (30%), Positives = 36/72 (49%), Gaps = 10/72 (13%) Query: 253 GMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGV----------VYKVDED 302 GMV D +V+NITD AFV++ G+ G + + + + K+ V V K + D Sbjct: 202 GMVLDGIVKNITDYGAFVDLGGLDGLLHITDMSWKRVKHPSAVVNVGDTVTVQVIKFNSD 261 Query: 303 KQQFEFSVKRYL 314 Q+ +K+ L Sbjct: 262 TQRISLGMKQLL 273 >gi|25395802|pir||E88481 protein C16A3.2 [imported] - Caenorhabditis elegans Length = 1810 Score = 38.9 bits (89), Expect = 0.17 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 9/95 (9%) Query: 395 GDANRGGFSLKGL----GKEIQCNMTYDEVMDVINAHLDKKGVGAIFEALVEADWGVERM 450 GDA RG L+GL K+ + Y E + HL + + E + + +M Sbjct: 1711 GDAERGRTLLEGLVTAHPKKTDLWLVYAEA---VLKHLGIEHARKVLERACNLGFSIHKM 1767 Query: 451 REIFKKWMAYEK--ANSGDVERVKCMAKQYVQQIS 483 R ++KKW+ E ++ VE VK A++++Q ++ Sbjct: 1768 RPLYKKWLEMESKHGDAAAVELVKAKAEKFLQAVA 1802 >gi|20544347|ref|XP_031992.7| similar to RRP5 protein homolog [Homo sapiens] Length = 1871 Score = 38.9 bits (89), Expect = 0.17 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 9/74 (12%) Query: 416 TYDEVMDVINAHLD-------KKGVGAIFEALVEADWGVERMREIFKKWMAYEK--ANSG 466 TY + DV + ++D +K V IFE ++ +RM+ FK+++ YEK Sbjct: 1790 TYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEK 1849 Query: 467 DVERVKCMAKQYVQ 480 DV+ VK A +YV+ Sbjct: 1850 DVQAVKAKALEYVE 1863 >gi|2498864|sp|Q14690|RRP5_HUMAN RRP5 protein homolog gi|1136430|dbj|BAA11502.1| similar to hypothetical protein YM9959.11C of S.cerevisiae. [Homo sapiens] Length = 1884 Score = 38.9 bits (89), Expect = 0.17 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 9/74 (12%) Query: 416 TYDEVMDVINAHLD-------KKGVGAIFEALVEADWGVERMREIFKKWMAYEK--ANSG 466 TY + DV + ++D +K V IFE ++ +RM+ FK+++ YEK Sbjct: 1803 TYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEK 1862 Query: 467 DVERVKCMAKQYVQ 480 DV+ VK A +YV+ Sbjct: 1863 DVQAVKAKALEYVE 1876 >gi|17552198|ref|NP_498398.1| S1 RNA binding domain containing protein, LEThal LET-716 (let-716) [Caenorhabditis elegans] gi|14573809|gb|AAB47599.3| Hypothetical protein C16A3.3 [Caenorhabditis elegans] Length = 1743 Score = 38.9 bits (89), Expect = 0.17 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 9/95 (9%) Query: 395 GDANRGGFSLKGL----GKEIQCNMTYDEVMDVINAHLDKKGVGAIFEALVEADWGVERM 450 GDA RG L+GL K+ + Y E + HL + + E + + +M Sbjct: 1644 GDAERGRTLLEGLVTAHPKKTDLWLVYAEA---VLKHLGIEHARKVLERACNLGFSIHKM 1700 Query: 451 REIFKKWMAYEK--ANSGDVERVKCMAKQYVQQIS 483 R ++KKW+ E ++ VE VK A++++Q ++ Sbjct: 1701 RPLYKKWLEMESKHGDAAAVELVKAKAEKFLQAVA 1735 >gi|15794409|ref|NP_284231.1| 30S ribosomal protein S1 [Neisseria meningitidis Z2491] gi|11275274|pir||G81842 30S ribosomal protein S1 NMA1515 [imported] - Neisseria meningitidis (strain Z2491 serogroup A) gi|7380157|emb|CAB84743.1| 30S ribosomal protein S1 [Neisseria meningitidis Z2491] Length = 561 Score = 38.5 bits (88), Expect = 0.22 Identities = 26/90 (28%), Positives = 43/90 (46%), Gaps = 11/90 (12%) Query: 233 VLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKY- 291 VL+ T G L +++ G V +V+NITD AFV++ GI G + + + K+ Sbjct: 174 VLEATLGEERKALLE-NLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHP 232 Query: 292 ---------VRGVVYKVDEDKQQFEFSVKR 312 V V K D++KQ+ +K+ Sbjct: 233 SEVLEVGQEVEAKVLKFDQEKQRVSLGMKQ 262 >gi|19075390|ref|NP_587890.1| putative rRNA biogenesis protein; rrp5 homolog; multiple S1 rna binding domain protein [Schizosaccharomyces pombe] gi|7492941|pir||T40847 probable rRNA biogenesis protein - fission yeast (Schizosaccharomyces pombe) gi|3650378|emb|CAA21087.1| putative rRNA biogenesis protein; rrp5 homolog; multiple S1 rna binding domain protein [Schizosaccharomyces pombe] Length = 1690 Score = 38.5 bits (88), Expect = 0.22 Identities = 28/92 (30%), Positives = 47/92 (50%), Gaps = 5/92 (5%) Query: 394 DGDANRGGFSLKGLGKEIQCNMT-YDEVMDVINAHLDKKGVGAIFEALVEADWGVERMRE 452 +GD RG +GL + ++ ++D+ D V +F+ L+ + ++ + Sbjct: 1595 NGDPERGRTIFEGLLSSYPKRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKF 1654 Query: 453 IFKKWMAYEKANSGD---VERVKCMAKQYVQQ 481 FKKW+AYEK N GD E+VK A +YV + Sbjct: 1655 AFKKWLAYEK-NIGDDEGAEQVKRRAIEYVSE 1685 >gi|15677167|ref|NP_274320.1| 30S ribosomal protein S1 [Neisseria meningitidis MC58] gi|11275276|pir||G81099 30S ribosomal protein S1 NMB1301 [imported] - Neisseria meningitidis (strain MC58 serogroup B) gi|7226541|gb|AAF41676.1| 30S ribosomal protein S1 [Neisseria meningitidis MC58] Length = 561 Score = 38.5 bits (88), Expect = 0.22 Identities = 26/90 (28%), Positives = 43/90 (46%), Gaps = 11/90 (12%) Query: 233 VLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKY- 291 VL+ T G L +++ G V +V+NITD AFV++ GI G + + + K+ Sbjct: 174 VLEATLGEERKALLE-NLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHP 232 Query: 292 ---------VRGVVYKVDEDKQQFEFSVKR 312 V V K D++KQ+ +K+ Sbjct: 233 SEVLEVGQEVEAKVLKFDQEKQRVSLGMKQ 262 >gi|15892670|ref|NP_360384.1| 30S ribosomal protein S1 [Rickettsia conorii] gi|25294433|pir||C97793 30S ribosomal protein S1 [imported] - Rickettsia conorii (strain Malish 7) gi|15619842|gb|AAL03285.1| 30S ribosomal protein S1 [Rickettsia conorii] Length = 568 Score = 37.4 bits (85), Expect = 0.50 Identities = 23/74 (31%), Positives = 37/74 (49%), Gaps = 12/74 (16%) Query: 250 IKVGMVADALVRNITDRAAFVEVNGISGRMKL-----------NECNSINTKYVRGVVYK 298 IK GMV + V+NITD AF+++ + G + L +E N K V+ +V K Sbjct: 202 IKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLDFNQK-VKVMVIK 260 Query: 299 VDEDKQQFEFSVKR 312 DE ++ +K+ Sbjct: 261 FDEKNKRISLGIKQ 274 >gi|27229162|ref|NP_082911.1| programmed cell death protein 11; programmed cell death protein 7 [Mus musculus] gi|26325946|dbj|BAB23064.2| unnamed protein product [Mus musculus] Length = 276 Score = 37.0 bits (84), Expect = 0.65 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 9/74 (12%) Query: 416 TYDEVMDVINAHLD-------KKGVGAIFEALVEADWGVERMREIFKKWMAYEK--ANSG 466 TY + DV + ++D + V IFE ++ +RM+ FK+++ YEK Sbjct: 195 TYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEK 254 Query: 467 DVERVKCMAKQYVQ 480 DV+ VK A +YV+ Sbjct: 255 DVQAVKAKALEYVE 268 >gi|20890036|ref|XP_129286.1| programmed cell death protein 11 [Mus musculus] Length = 1862 Score = 37.0 bits (84), Expect = 0.65 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 9/74 (12%) Query: 416 TYDEVMDVINAHLD-------KKGVGAIFEALVEADWGVERMREIFKKWMAYEK--ANSG 466 TY + DV + ++D + V IFE ++ +RM+ FK+++ YEK Sbjct: 1781 TYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEK 1840 Query: 467 DVERVKCMAKQYVQ 480 DV+ VK A +YV+ Sbjct: 1841 DVQAVKAKALEYVE 1854 >gi|16079345|ref|NP_390169.1| alternate gene name: jofD~similar to ribosomal protein S1 homolog [Bacillus subtilis] gi|585942|sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog gi|7447091|pir||B69935 ribosomal protein S1 homolog ypfD - Bacillus subtilis gi|533106|gb|AAA85150.1| unknown gi|1146215|gb|AAC83962.1| similar to Escherichia coli S1 ribosomal protein; putative [Bacillus subtilis] gi|2634706|emb|CAB14204.1| alternate gene name: jofD~similar to ribosomal protein S1 homolog [Bacillus subtilis] Length = 382 Score = 36.6 bits (83), Expect = 0.85 Identities = 20/72 (27%), Positives = 37/72 (50%), Gaps = 10/72 (13%) Query: 250 IKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINT----------KYVRGVVYKV 299 ++VG V D V+ +TD AFV++ GI G + +++ + + + V+ V V Sbjct: 185 LEVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSV 244 Query: 300 DEDKQQFEFSVK 311 D D ++ S+K Sbjct: 245 DRDNERISLSIK 256 >gi|22962061|gb|ZP_00009667.1| hypothetical protein [Rhodopseudomonas palustris] Length = 584 Score = 36.6 bits (83), Expect = 0.85 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%) Query: 224 QKGELVTVR--VLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGISGRMKL 281 ++G +V R VL+ET L + +++ G V D +V+NITD AFV++ GI G + + Sbjct: 190 RRGNIVVSRRTVLEETRAEQRQELVQ-NLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHV 248 Query: 282 NE 283 + Sbjct: 249 TD 250 >gi|21961225|gb|AAH34528.1| Similar to serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8 [Homo sapiens] Length = 242 Score = 36.6 bits (83), Expect = 0.85 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Query: 251 KVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGVVYKVDEDKQQFEFSV 310 K+ V DA + V VN I + K NE + KY RG+++K +E+K+ + Sbjct: 143 KISEVLDA--GTVDPLTKLVLVNAIYFKGKWNE--QFDRKYTRGMLFKTNEEKKTVQMMF 198 Query: 311 KR-YLKMARENELEEALISLPFTEAD 335 K KM +E+ ++ LP+ E + Sbjct: 199 KEAKFKMGYADEVHTQVLELPYVEEE 224 >gi|4505791|ref|NP_002631.1| serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8; protease inhibitor 8 (ovalbumin type) [Homo sapiens] gi|1709895|sp|P50452|SPB8_HUMAN Cytoplasmic antiproteinase 2 (CAP2) (CAP-2) (Protease inhibitor 8) (Serpin B8) gi|11273404|pir||A59273 proteinase inhibitor 8 - human gi|1160927|gb|AAC41939.1| cytoplasmic antiproteinase 2 Length = 374 Score = 36.6 bits (83), Expect = 0.85 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Query: 251 KVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGVVYKVDEDKQQFEFSV 310 K+ V DA + V VN I + K NE + KY RG+++K +E+K+ + Sbjct: 143 KISEVLDA--GTVDPLTKLVLVNAIYFKGKWNE--QFDRKYTRGMLFKTNEEKKTVQMMF 198 Query: 311 KR-YLKMARENELEEALISLPFTEAD 335 K KM +E+ ++ LP+ E + Sbjct: 199 KEAKFKMGYADEVHTQVLELPYVEEE 224 >gi|15604379|ref|NP_220895.1| 30S RIBOSOMAL PROTEIN S1 (rpsA) [Rickettsia prowazekii] gi|6226091|sp|Q9ZD28|RS1_RICPR 30S ribosomal protein S1 gi|7440092|pir||A71656 ribosomal protein S1 - Rickettsia prowazekii gi|3861071|emb|CAA14971.1| 30S RIBOSOMAL PROTEIN S1 (rpsA) [Rickettsia prowazekii] Length = 568 Score = 36.2 bits (82), Expect = 1.1 Identities = 22/74 (29%), Positives = 38/74 (50%), Gaps = 12/74 (16%) Query: 250 IKVGMVADALVRNITDRAAFVEVNGISGRMKL-----------NECNSINTKYVRGVVYK 298 IK G+V + +V+NITD AF+++ + G + L +E N K V+ +V K Sbjct: 202 IKEGIVLEGVVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQK-VKVMVIK 260 Query: 299 VDEDKQQFEFSVKR 312 DE ++ +K+ Sbjct: 261 FDEKTKRISLGIKQ 274 >gi|22977358|gb|ZP_00023167.1| hypothetical protein [Ralstonia metallidurans] Length = 564 Score = 36.2 bits (82), Expect = 1.1 Identities = 18/73 (24%), Positives = 36/73 (48%), Gaps = 10/73 (13%) Query: 250 IKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKY----------VRGVVYKV 299 +K G + + +V+NITD AFV++ GI G + + + ++ + + K Sbjct: 194 LKEGAIVNGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 253 Query: 300 DEDKQQFEFSVKR 312 D++K + VK+ Sbjct: 254 DQEKNRVSLGVKQ 266 >gi|13508497|gb|AAF15293.3|AAF15293 erythrocyte membrane-associated giant protein antigen 332 [Plasmodium falciparum] Length = 5458 Score = 36.2 bits (82), Expect = 1.1 Identities = 39/138 (28%), Positives = 65/138 (46%), Gaps = 18/138 (13%) Query: 94 EEVLEKDKIYIFEITEETFAYKKVRLYKKNVYQGRYRKGKFLYEVPETLS--EKVTEDAA 151 EE++E++ + EI EE + +V + V + F EV E +S +++ EDA+ Sbjct: 2316 EEIVEEEGSVVEEIVEEEGSVSEVVDETELVNDEIVEQAPFTEEVEEQVSVNDEIIEDAS 2375 Query: 152 NRPRRVLTGTLIVQRNHKENDMVTAEQVSDNVFVETGCPLREVRGRIIATNPHIIVQDGA 211 V +E++ +T E VS E G + +V T IVQDG Sbjct: 2376 ------------VAEAVEESESIT-ESVSQEEETEKGFVIEKVEETGAVTEE--IVQDGL 2420 Query: 212 ISVMVLEKSTTVQKGELV 229 I+ +LE+S +V GE++ Sbjct: 2421 ITEEILEESESV-NGEII 2437 Score = 35.0 bits (79), Expect = 2.5 Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 13/228 (5%) Query: 93 DEEVLEKDKIYIFEITEETFAYKKVRLYKKNVYQGRY--RKGKFLYEVPE---TLSEKVT 147 +EEVLE++ Y EI EE +Y + L ++ + +G + E+ E + +E++ Sbjct: 3459 NEEVLEEEGSYTEEILEEEGSYTEEILEEEGSFTEEILEEEGSYNEEILEEEGSYNEEIL 3518 Query: 148 EDAANRPRRVL----TGTLIVQRNHKENDMVTAEQVSDNVFVETGCPLREVRGRIIATNP 203 E+ + +L + T +N+ + E + + FV G + EV Sbjct: 3519 EEEGSFTEEILEEEGSATDYFVGQGSDNEEIIEEGSATDYFVGQGSIIEEVLEEEGLDTE 3578 Query: 204 HIIVQDGAISVMVLEKSTT--VQKGELVTVRVLDETFGRYVGTLRRF--DIKVGMVADAL 259 + +G+ + +S T V++ E V +L+ET V + DIK +V + + Sbjct: 3579 KVFENEGSATEFEETESFTEVVEETESVNENILEETSINEVQKIESITEDIKEQLVPEEI 3638 Query: 260 VRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGVVYKVDEDKQQFE 307 D E S +K + +S K + V ++ E++ E Sbjct: 3639 KEEQLDSEEIKEEQLDSEEIKEEQLDSEEIKEEQLVPEEIKEEQLDSE 3686 Score = 33.1 bits (74), Expect = 9.4 Identities = 46/257 (17%), Positives = 112/257 (42%), Gaps = 27/257 (10%) Query: 94 EEVLEKDKIYIFEITEETFAYKKVRLYKKNVYQGRYRKGKFLYEVPETLSEKVTEDAANR 153 EE+ E+++ E+ EE ++ K+ + +G + + E +T E V E+ + Sbjct: 3758 EEIKEQEESVNEEVLEEV---EETESIKEEIVEGGIATQEIIEEESDT-KEVVEEEVIDS 3813 Query: 154 PRRVLTGTL--------------IVQRNHKENDMVTAEQVSDNVFVETGCPLREVRGRII 199 + V G++ +V+ +++ ++ + VE G + + G Sbjct: 3814 EKLVDAGSVTGEVMPEEVSVTDEVVEEGSTTEEVLEEQKSVNEEVVEDGLTIDDFVGLQG 3873 Query: 200 ATNPHIIVQDGAISVMVLEKSTTVQKGELVTVRV-LDETFGRYVGTLRRFDIKVGMVADA 258 +T ++ +DG+ +LE+ T + E+V +V + E G++ I+ VA+ Sbjct: 3874 STTEEVVEEDGSAIEKILEEETATE--EIVEKQVSVTEDIVEKEGSVNEEIIEEASVAEE 3931 Query: 259 LVRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGVVYKVDEDKQQFEFSVKRYLKMAR 318 +++ +F E I G+ + I+ + + + +E+K E ++ +++ Sbjct: 3932 IIQG----GSFTE--EIVGQEESATEEVIDEEGLISNEIEEEEEKSVTEEMIEEVEEVSV 3985 Query: 319 ENELEEALISLPFTEAD 335 ++E+EE ++ E + Sbjct: 3986 DDEVEEVSVAEEIVEEE 4002 >gi|17937799|ref|NP_534588.1| 30S ribosomal protein S1 [Agrobacterium tumefaciens str. C58 (U. Washington)] gi|25294437|pir||AB3061 30S ribosomal protein S1 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gi|17742555|gb|AAL44904.1| 30S ribosomal protein S1 [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 566 Score = 36.2 bits (82), Expect = 1.1 Identities = 21/68 (30%), Positives = 34/68 (49%), Gaps = 18/68 (26%) Query: 216 VLEKSTTVQKGELVTVRVLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGI 275 VLE+S Q+ E+V +++ G V D +V+NITD AFV++ GI Sbjct: 179 VLEESRAEQRSEIVQ------------------NLEEGQVVDGVVKNITDYGAFVDLGGI 220 Query: 276 SGRMKLNE 283 G + + + Sbjct: 221 DGLLHVTD 228 >gi|15890870|ref|NP_356542.1| AGR_L_1496p [Agrobacterium tumefaciens] gi|25294436|pir||E98225 30S ribosomal protein S1 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) gi|15159167|gb|AAK89327.1| AGR_L_1496p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 572 Score = 36.2 bits (82), Expect = 1.1 Identities = 21/68 (30%), Positives = 34/68 (49%), Gaps = 18/68 (26%) Query: 216 VLEKSTTVQKGELVTVRVLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGI 275 VLE+S Q+ E+V +++ G V D +V+NITD AFV++ GI Sbjct: 185 VLEESRAEQRSEIVQ------------------NLEEGQVVDGVVKNITDYGAFVDLGGI 226 Query: 276 SGRMKLNE 283 G + + + Sbjct: 227 DGLLHVTD 234 >gi|23508683|ref|NP_701352.1| antigen 332, putative [Plasmodium falciparum 3D7] gi|23496420|gb|AAN36076.1|AE014843_40 antigen 332, putative [Plasmodium falciparum 3D7] Length = 5507 Score = 36.2 bits (82), Expect = 1.1 Identities = 39/138 (28%), Positives = 65/138 (46%), Gaps = 18/138 (13%) Query: 94 EEVLEKDKIYIFEITEETFAYKKVRLYKKNVYQGRYRKGKFLYEVPETLS--EKVTEDAA 151 EE++E++ + EI EE + +V + V + F EV E +S +++ EDA+ Sbjct: 2251 EEIVEEEGSVVEEIVEEEGSVSEVVDETELVNDEIVEQAPFTEEVEEQVSVNDEIIEDAS 2310 Query: 152 NRPRRVLTGTLIVQRNHKENDMVTAEQVSDNVFVETGCPLREVRGRIIATNPHIIVQDGA 211 V +E++ +T E VS E G + +V T IVQDG Sbjct: 2311 ------------VAEAVEESESIT-ESVSQEEETEKGFVIEKVEETGAVTEE--IVQDGL 2355 Query: 212 ISVMVLEKSTTVQKGELV 229 I+ +LE+S +V GE++ Sbjct: 2356 ITEEILEESESV-NGEII 2372 Score = 33.1 bits (74), Expect = 9.4 Identities = 46/257 (17%), Positives = 112/257 (42%), Gaps = 27/257 (10%) Query: 94 EEVLEKDKIYIFEITEETFAYKKVRLYKKNVYQGRYRKGKFLYEVPETLSEKVTEDAANR 153 EE+ E+++ E+ EE ++ K+ + +G + + E +T E V E+ + Sbjct: 3764 EEIKEQEESVNEEVLEEV---EETESIKEEIVEGGIATQEIIEEESDT-KEVVEEEVIDS 3819 Query: 154 PRRVLTGTL--------------IVQRNHKENDMVTAEQVSDNVFVETGCPLREVRGRII 199 + V G++ +V+ +++ ++ + VE G + + G Sbjct: 3820 EKLVDAGSVTGEVMPEEVSVTDEVVEEGSTTEEVLEEQKSVNEEVVEDGLTIDDFVGLQG 3879 Query: 200 ATNPHIIVQDGAISVMVLEKSTTVQKGELVTVRV-LDETFGRYVGTLRRFDIKVGMVADA 258 +T ++ +DG+ +LE+ T + E+V +V + E G++ I+ VA+ Sbjct: 3880 STTEEVVEEDGSAIEKILEEETATE--EIVEKQVSVTEDIVEKEGSVNEEIIEEASVAEE 3937 Query: 259 LVRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGVVYKVDEDKQQFEFSVKRYLKMAR 318 +++ +F E I G+ + I+ + + + +E+K E ++ +++ Sbjct: 3938 IIQG----GSFTE--EIVGQEESATEEVIDEEGLISNEIEEEEEKSVTEEMIEEVEEVSV 3991 Query: 319 ENELEEALISLPFTEAD 335 ++E+EE ++ E + Sbjct: 3992 DDEVEEVSVAEEIVEEE 4008 >gi|22984325|gb|ZP_00029476.1| hypothetical protein [Burkholderia fungorum] Length = 577 Score = 36.2 bits (82), Expect = 1.1 Identities = 18/73 (24%), Positives = 36/73 (48%), Gaps = 10/73 (13%) Query: 250 IKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKY----------VRGVVYKV 299 +K G + + +V+NITD AFV++ GI G + + + ++ V + K Sbjct: 204 LKEGAIVEGVVKNITDYGAFVDLGGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 263 Query: 300 DEDKQQFEFSVKR 312 D++K + +K+ Sbjct: 264 DQEKNRVSLGIKQ 276 >gi|17545628|ref|NP_519030.1| PROBABLE 30S RIBOSOMAL SUBUNIT PROTEIN S1 [Ralstonia solanacearum] gi|17427921|emb|CAD14611.1| PROBABLE 30S RIBOSOMAL SUBUNIT PROTEIN S1 [Ralstonia solanacearum] Length = 562 Score = 36.2 bits (82), Expect = 1.1 Identities = 18/73 (24%), Positives = 36/73 (48%), Gaps = 10/73 (13%) Query: 250 IKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKY----------VRGVVYKV 299 +K G + + +V+NITD AFV++ GI G + + + ++ + + K Sbjct: 192 LKEGAIVNGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 251 Query: 300 DEDKQQFEFSVKR 312 D++K + VK+ Sbjct: 252 DQEKNRVSLGVKQ 264 >gi|22955798|gb|ZP_00003599.1| hypothetical protein [Nitrosomonas europaea] Length = 572 Score = 36.2 bits (82), Expect = 1.1 Identities = 26/90 (28%), Positives = 42/90 (45%), Gaps = 11/90 (12%) Query: 233 VLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKY- 291 VL+ET G L ++ G V +V+NITD AFV++ GI G + + + K+ Sbjct: 182 VLEETQGADRDELLA-SLQDGAVVQGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHP 240 Query: 292 ---------VRGVVYKVDEDKQQFEFSVKR 312 V V K D++K + +K+ Sbjct: 241 TEVINVGDEVTAKVLKFDQEKNRVSLGLKQ 270 >gi|23015735|gb|ZP_00055503.1| hypothetical protein [Magnetospirillum magnetotacticum] Length = 565 Score = 35.8 bits (81), Expect = 1.5 Identities = 20/61 (32%), Positives = 35/61 (56%), Gaps = 3/61 (4%) Query: 225 KGELVTVR--VLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGISGRMKLN 282 +G +V R VL+ET L ++K G + + +V+NITD AFV++ G+ G + + Sbjct: 171 RGNIVVSRRAVLEETRAEQRSELIE-NLKEGQILEGVVKNITDYGAFVDLGGVDGLLHVT 229 Query: 283 E 283 + Sbjct: 230 D 230 >gi|20533391|ref|XP_115686.1| similar to RIKEN cDNA 2010300C02 gene [Homo sapiens] Length = 1048 Score = 35.8 bits (81), Expect = 1.5 Identities = 29/83 (34%), Positives = 37/83 (43%), Gaps = 6/83 (7%) Query: 327 ISLPFTEADGEGCTEIPVTDACRSEASAHAEAAVCESAKRRKTHAAHRPGFGRYLSELVS 386 ++ PF A EG T P TD +A +EA RK A RP R + Sbjct: 481 VASPFPTAIPEGDTTPPETDP-----AATSEAPSARDGPERKAAAPERPKAERAEAPPAG 535 Query: 387 SEIRAASDGDANRGGFSLKGLGK 409 +E RAA + A RGG L+G K Sbjct: 536 AE-RAAPERKAERGGAELRGAKK 557 >gi|9366654|emb|CAB95416.1| rRNA biogenesis protein, possible [Trypanosoma brucei] Length = 679 Score = 35.8 bits (81), Expect = 1.5 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%) Query: 433 VGAIFEALVEADWGVERMREIFKKWMAYEKANS--GDVERVKCMAKQYVQ 480 V +FE V + + M+++ ++M++E+A+ DVE+VK A+ YV+ Sbjct: 574 VRGLFERAVSTSFSAKVMQQVLTRFMSFERAHGTPADVEKVKARARSYVE 623 >gi|19554025|ref|NP_602027.1| putative membrane protease subunit [Corynebacterium glutamicum ATCC 13032] gi|21325609|dbj|BAC00230.1| Membrane protease subunits, stomatin/prohibitin homologs [Corynebacterium glutamicum ATCC 13032] Length = 325 Score = 35.8 bits (81), Expect = 1.5 Identities = 42/170 (24%), Positives = 72/170 (41%), Gaps = 19/170 (11%) Query: 214 VMVLEKSTTVQKGELVTVRVLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVN 273 V+ + V G +TV+ FGRY+GTLRR + + ++ + ++ R E N Sbjct: 89 VVTITSVKVVSPGHTLTVQF----FGRYIGTLRRTGLSF-VPPLSVTKKVSVRVRNFETN 143 Query: 274 GISGRMKLNECNSINTKYVRGVVYKVDEDKQQFEFSV---KRYLKMARENELEEALISLP 330 K+N+ N +V++V D Q FSV + +L E+ L P Sbjct: 144 ----EAKVNDYNGNPINIAAIIVWQV-ADTAQASFSVEDFEEFLHQQAESALRHVATQHP 198 Query: 331 F-TEADG----EGCTEIPVTDACRSEASAHAEAAVCESAKRRKTHAAHRP 375 + + DG G T+ V++ E + A A E + R + ++ P Sbjct: 199 YDSPVDGRVSLRGATD-EVSEELADEVAQRAAVAGLEIVEARISSLSYAP 247 >gi|21673127|ref|NP_661192.1| ribosomal protein S1 [Chlorobium tepidum TLS] gi|21646202|gb|AAM71534.1| ribosomal protein S1 [Chlorobium tepidum TLS] Length = 550 Score = 35.8 bits (81), Expect = 1.5 Identities = 15/35 (42%), Positives = 24/35 (67%) Query: 249 DIKVGMVADALVRNITDRAAFVEVNGISGRMKLNE 283 +IKVGMV + V+NITD FV++ G+ G + + + Sbjct: 179 NIKVGMVLEGTVKNITDFGIFVDLGGLDGLVHITD 213 >gi|23005827|gb|ZP_00048451.1| hypothetical protein [Magnetospirillum magnetotacticum] Length = 220 Score = 35.4 bits (80), Expect = 1.9 Identities = 21/68 (30%), Positives = 34/68 (49%), Gaps = 18/68 (26%) Query: 216 VLEKSTTVQKGELVTVRVLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGI 275 VLE+S Q+ ELV +++ G V D +V+NIT+ AFV++ GI Sbjct: 162 VLEESRAEQRSELVA------------------NLEEGQVIDGVVKNITEYGAFVDLGGI 203 Query: 276 SGRMKLNE 283 G + + + Sbjct: 204 DGLLHVTD 211 >gi|243180|gb|AAB21091.1| ribosomal protein S4 [Bacillus stearothermophilus, Peptide, 198 aa] Length = 198 Score = 35.4 bits (80), Expect = 1.9 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 15/103 (14%) Query: 130 RKGKFLYEVPETLSEKVTEDAANRPRRVLTGTLIVQRNHKENDMVTAEQVSDNVFVETGC 189 +K + +Y V E K E+A P + H EN M+ E DN+ G Sbjct: 53 QKLRHMYGVNERQFRKTFEEAGKMPGK-----------HGENFMILLESRLDNLVYRLGL 101 Query: 190 PLREVRGRIIATNPHIIVQDGAISVMVLEKSTTVQKGELVTVR 232 + R + T+ HIIV +++ S V+ G+ + VR Sbjct: 102 ARTRRQARQLVTHGHIIVDGSRVNI----PSYRVKPGQTIAVR 140 >gi|26454648|sp|P81288|RS4_BACST 30S ribosomal protein S4 Length = 200 Score = 35.4 bits (80), Expect = 1.9 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 15/103 (14%) Query: 130 RKGKFLYEVPETLSEKVTEDAANRPRRVLTGTLIVQRNHKENDMVTAEQVSDNVFVETGC 189 +K + +Y V E K E+A P + H EN M+ E DN+ G Sbjct: 55 QKLRHMYGVNERQFRKTFEEAGKMPGK-----------HGENFMILLESRLDNLVYRLGL 103 Query: 190 PLREVRGRIIATNPHIIVQDGAISVMVLEKSTTVQKGELVTVR 232 + R + T+ HIIV +++ S V+ G+ + VR Sbjct: 104 ARTRRQARQLVTHGHIIVDGSRVNI----PSYRVKPGQTIAVR 142 >gi|21223411|ref|NP_629190.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] gi|8927401|gb|AAF82059.1|AF230489_1 F42a [Streptomyces coelicolor A3(2)] gi|9967665|emb|CAC05883.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 312 Score = 35.4 bits (80), Expect = 1.9 Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 17/149 (11%) Query: 236 ETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEV--NGISGRMKLNECNSINTKYVR 293 + FGRY GT+R+ ++ V T R N + +K+N+ + Sbjct: 94 QLFGRYRGTIRQDGLR-------WVNPFTSRTKISTRVRNHETAVLKVNDAYGNPIELAA 146 Query: 294 GVVYKVDEDKQQFEFSVKRYLKMAR---ENELEEALISLPFTEADGEGCT----EIPVTD 346 VV++V ED Q F V Y++ E + I P+ D +G + +T+ Sbjct: 147 VVVWRV-EDTAQATFEVDDYVEFVSTQTEAAVRHIAIEYPYDAHDEDGLSLRGNAEEITE 205 Query: 347 ACRSEASAHAEAAVCESAKRRKTHAAHRP 375 E A EAA + + R TH A+ P Sbjct: 206 KLAVELHARVEAAGVQIIESRFTHLAYAP 234 >gi|15895122|ref|NP_348471.1| Fusion Penicillin tolerance LytB domain (N-terminus) and S1 ribosomal protein (C-terminus) [Clostridium acetobutylicum] gi|25501481|pir||H97127 fusion Penicillin tolerance LytB domain (N-terminus) and S1 ribosomal protein (C-terminus) [imported] - Clostridium acetobutylicum gi|15024823|gb|AAK79811.1|AE007693_9 Fusion Penicillin tolerance LytB domain (N-terminus) and S1 ribosomal protein (C-terminus) [Clostridium acetobutylicum] Length = 642 Score = 35.0 bits (79), Expect = 2.5 Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 15/115 (13%) Query: 211 AISVMVLEKSTTVQKGELVTVR--VLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAA 268 + V ++E ST ++ ++V R +L + + T+ ++ G V + V+ +TD A Sbjct: 441 SFDVAIIEYSTKKRQTKIVASRRALLSKEKEKVEETVWN-KLEEGQVVEGEVKRLTDFGA 499 Query: 269 FVEVNGISGRMKLNECN-----------SINTKYVRGVVYKVDEDKQQFEFSVKR 312 FVE+ G+ G + ++E + I K ++ V VD++ ++ SVK+ Sbjct: 500 FVEIEGVDGLLHVSEISWGRVEKPADVLKIGDK-IKVYVLSVDKENKKLSLSVKK 553 >gi|7510752|pir||T32546 hypothetical protein ZC416.6 - Caenorhabditis elegans Length = 587 Score = 35.0 bits (79), Expect = 2.5 Identities = 22/64 (34%), Positives = 31/64 (48%) Query: 419 EVMDVINAHLDKKGVGAIFEALVEADWGVERMREIFKKWMAYEKANSGDVERVKCMAKQY 478 EV+D +N L GVG E VE + KKW+A +++ GD+ A Q Sbjct: 405 EVLDTVNFDLWFNGVGMPPEKPNYGQSMVEACEVLLKKWLAADESTVGDITSEDYYAMQP 464 Query: 479 VQQI 482 +QQI Sbjct: 465 LQQI 468 >gi|17544504|ref|NP_500385.1| Leukotriene 4 hydrolase (71.3 kD) [Caenorhabditis elegans] gi|14574519|gb|AAB88369.2| Hypothetical protein ZC416.6 [Caenorhabditis elegans] Length = 625 Score = 35.0 bits (79), Expect = 2.5 Identities = 22/64 (34%), Positives = 31/64 (48%) Query: 419 EVMDVINAHLDKKGVGAIFEALVEADWGVERMREIFKKWMAYEKANSGDVERVKCMAKQY 478 EV+D +N L GVG E VE + KKW+A +++ GD+ A Q Sbjct: 443 EVLDTVNFDLWFNGVGMPPEKPNYGQSMVEACEVLLKKWLAADESTVGDITSEDYYAMQP 502 Query: 479 VQQI 482 +QQI Sbjct: 503 LQQI 506 >gi|7245451|pdb|1EG0|A Chain A, Fitting Of Components With Known Structure Into An 11.5 A Cryo-Em Map Of The E.Coli 70s Ribosome gi|6137374|pdb|1C05|A Chain A, Solution Structure Of Ribosomal Protein S4 Delta 41, Refined With Dipolar Couplings (Minimized Average Structure gi|6137435|pdb|1C06|A Chain A, Solution Structure Of Ribosomal Protein S4 Delta 41, Refined With Dipolar Couplings (Ensemble Of 16 Structures) gi|6137687|pdb|1QD7|C Chain C, Partial Model For 30s Ribosomal Subunit Length = 159 Score = 34.7 bits (78), Expect = 3.2 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 15/103 (14%) Query: 130 RKGKFLYEVPETLSEKVTEDAANRPRRVLTGTLIVQRNHKENDMVTAEQVSDNVFVETGC 189 +K + +Y V E K E+A P + H EN M+ E DN+ G Sbjct: 14 QKLRHMYGVNERQFRKTFEEAGKMPGK-----------HGENFMILLESRLDNLVYRLGL 62 Query: 190 PLREVRGRIIATNPHIIVQDGAISVMVLEKSTTVQKGELVTVR 232 + R + T+ HI+V +++ S V+ G+ + VR Sbjct: 63 ARTRRQARQLVTHGHILVDGSRVNI----PSYRVKPGQTIAVR 101 >gi|23500942|ref|NP_697069.1| ribosomal protein S1 [Brucella suis 1330] gi|23346797|gb|AAN28984.1|AE014317_7 ribosomal protein S1 [Brucella suis 1330] Length = 566 Score = 34.7 bits (78), Expect = 3.2 Identities = 20/68 (29%), Positives = 34/68 (49%), Gaps = 18/68 (26%) Query: 216 VLEKSTTVQKGELVTVRVLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGI 275 VLE+S Q+ E+V +++ G V + +V+NITD AFV++ GI Sbjct: 179 VLEESRAEQRSEIVQ------------------NLEEGQVVEGVVKNITDYGAFVDLGGI 220 Query: 276 SGRMKLNE 283 G + + + Sbjct: 221 DGLLHVTD 228 >gi|19112200|ref|NP_595408.1| carboxypeptidase precursor [Schizosaccharomyces pombe] gi|7490182|pir||T40260 carboxypeptidase precursor - fission yeast (Schizosaccharomyces pombe) gi|3738184|emb|CAA21277.1| carboxypeptidase precursor [Schizosaccharomyces pombe] Length = 497 Score = 34.7 bits (78), Expect = 3.2 Identities = 20/84 (23%), Positives = 40/84 (46%), Gaps = 2/84 (2%) Query: 95 EVLEKDKIYIFEITEETFAYKKVRLYKKNV--YQGRYRKGKFLYEVPETLSEKVTEDAAN 152 ++L+K + +I + F + +RL ++N ++ +YR + + ETL E + D N Sbjct: 91 DILQKAQSQNLDIWDYNFDHVDLRLKEENFDFWKSQYRSDILINNLTETLFESIVPDTTN 150 Query: 153 RPRRVLTGTLIVQRNHKENDMVTA 176 P V+ H ++M T+ Sbjct: 151 SPFSTEAFLQAVENGHLNHEMFTS 174 >gi|15964008|ref|NP_384361.1| 30S RIBOSOMAL PROTEIN S1 [Sinorhizobium meliloti] gi|7404449|sp|P14129|RS1_RHIME 30S ribosomal protein S1 gi|15073184|emb|CAC41692.1| 30S RIBOSOMAL PROTEIN S1 [Sinorhizobium meliloti] Length = 568 Score = 34.7 bits (78), Expect = 3.2 Identities = 20/68 (29%), Positives = 34/68 (49%), Gaps = 18/68 (26%) Query: 216 VLEKSTTVQKGELVTVRVLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGI 275 VLE+S Q+ E+V +++ G V + +V+NITD AFV++ GI Sbjct: 179 VLEESRAEQRSEIVQ------------------NLEEGQVVEGVVKNITDYGAFVDLGGI 220 Query: 276 SGRMKLNE 283 G + + + Sbjct: 221 DGLLHVTD 228 >gi|70848|pir||R3ZR1 ribosomal protein S1 - Rhizobium meliloti gi|46339|emb|CAA30404.1| ribosomal protein S1 (AA 1-568) [Sinorhizobium meliloti] Length = 568 Score = 34.7 bits (78), Expect = 3.2 Identities = 20/68 (29%), Positives = 34/68 (49%), Gaps = 18/68 (26%) Query: 216 VLEKSTTVQKGELVTVRVLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGI 275 VLE+S Q+ E+V +++ G V + +V+NITD AFV++ GI Sbjct: 179 VLEESRAEQRSEIVQ------------------NLEEGQVVEGVVKNITDYGAFVDLGGI 220 Query: 276 SGRMKLNE 283 G + + + Sbjct: 221 DGLLHVTD 228 >gi|13474344|ref|NP_105912.1| ribosomal protein S1 [Mesorhizobium loti] gi|14025097|dbj|BAB51698.1| ribosomal protein S1 [Mesorhizobium loti] Length = 565 Score = 34.7 bits (78), Expect = 3.2 Identities = 20/68 (29%), Positives = 34/68 (49%), Gaps = 18/68 (26%) Query: 216 VLEKSTTVQKGELVTVRVLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGI 275 VLE+S Q+ E+V +++ G V + +V+NITD AFV++ GI Sbjct: 179 VLEESRAEQRSEIVQ------------------NLEEGQVVEGVVKNITDYGAFVDLGGI 220 Query: 276 SGRMKLNE 283 G + + + Sbjct: 221 DGLLHVTD 228 >gi|17988198|ref|NP_540832.1| SSU ribosomal protein S1P [Brucella melitensis] gi|25294438|pir||AE3491 SSU ribosomal protein S1P [imported] - Brucella melitensis (strain 16M) gi|17983961|gb|AAL53096.1| SSU ribosomal protein S1P [Brucella melitensis] Length = 576 Score = 34.7 bits (78), Expect = 3.2 Identities = 20/68 (29%), Positives = 34/68 (49%), Gaps = 18/68 (26%) Query: 216 VLEKSTTVQKGELVTVRVLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGI 275 VLE+S Q+ E+V +++ G V + +V+NITD AFV++ GI Sbjct: 189 VLEESRAEQRSEIVQ------------------NLEEGQVVEGVVKNITDYGAFVDLGGI 230 Query: 276 SGRMKLNE 283 G + + + Sbjct: 231 DGLLHVTD 238 >gi|23026655|gb|ZP_00065128.1| hypothetical protein [Microbulbifer degradans 2-40] Length = 557 Score = 33.9 bits (76), Expect = 5.5 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 249 DIKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGVVYKVDE-DKQQFE 307 +++ GM +V+N+TD AFV++ G+ G + + + K+ +V DE D + + Sbjct: 185 NLQEGMAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVAVGDEIDVKVLK 244 Query: 308 FSVKR 312 F +R Sbjct: 245 FDRER 249 >gi|10998136|dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis thaliana] Length = 1765 Score = 33.9 bits (76), Expect = 5.5 Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 22/110 (20%) Query: 379 RYLSELVSSEIRAASDGDANRGGFSLKGLGKEIQCNMTYDEVMDVINAHLDKK------- 431 +++S+ E + G A+RG +G+ +E Y + D+ + +LD++ Sbjct: 1660 KFISQTAILEFKC---GVADRGRSLFEGVLRE------YPKRTDLWSVYLDQEIRLGEDD 1710 Query: 432 GVGAIFEALVEADWGVERMREIFKKWMAYEKANSGDVERVKCMAKQYVQQ 481 + ++FE + ++M+ +FKK++ YEK + GD ERV +YV+Q Sbjct: 1711 VIRSLFERAISLSLPPKKMKFLFKKFLEYEK-SVGDEERV-----EYVKQ 1754 >gi|17230699|ref|NP_487247.1| serine/threonine kinase [Nostoc sp. PCC 7120] gi|25534593|pir||AH2206 serine/threonine kinase [imported] - Nostoc sp. (strain PCC 7120) gi|17132302|dbj|BAB74906.1| serine/threonine kinase [Nostoc sp. PCC 7120] Length = 534 Score = 33.9 bits (76), Expect = 5.5 Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 118 RLYKKNVYQGRYRKGKFLYEVPETLSEKVTEDAANRPRRVLTGTLIVQRNHKENDMVTAE 177 R+ K G Y F E P ++ VT + R+ LT L V++N K N++V+AE Sbjct: 424 RIVKALADTGYYHLLFFAIEEPTACAQVVTLTLTAQQRQQLTDWLTVKQNIKSNELVSAE 483 Query: 178 Q 178 Q Sbjct: 484 Q 484 >gi|23024286|gb|ZP_00063503.1| hypothetical protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 203 Score = 33.9 bits (76), Expect = 5.5 Identities = 24/91 (26%), Positives = 43/91 (46%), Gaps = 10/91 (10%) Query: 142 LSEKVTEDAANRPRRVLTGTLIVQRNHKENDMVTAEQVSDNVFVETGCPLREVRGRIIAT 201 L+E+ + N+ ++ GT H N M++ EQ D+V G + R + Sbjct: 63 LTERQFKALFNKAGKIRKGT------HGTNFMISLEQRLDSVVYRLGLATTRQQARQLVN 116 Query: 202 NPHIIVQDGAISVMVLEKSTTVQKGELVTVR 232 + HI+V + + S +VQ G++V+VR Sbjct: 117 HGHILVDGKRVDI----PSYSVQPGQVVSVR 143 >gi|16768960|gb|AAL28699.1| LD12377p [Drosophila melanogaster] Length = 948 Score = 33.9 bits (76), Expect = 5.5 Identities = 25/77 (32%), Positives = 37/77 (47%), Gaps = 6/77 (7%) Query: 243 GTLRRFDIKVGMVADALVRNITDRAAFVEV----NGISGRMKLNECN-SINTKYVRGVVY 297 G R D+ +G V V N+T AFV+V NG+ +N S+ + V VV Sbjct: 860 GLTRLDDLSMGEVVTGAVTNVTQFGAFVDVGVERNGLIHNSNMNNSQLSVGDRIVASVV- 918 Query: 298 KVDEDKQQFEFSVKRYL 314 KVD ++Q E ++ L Sbjct: 919 KVDLKRRQLELRLENML 935 >gi|15229915|ref|NP_187803.1| hypothetical protein; protein id: At3g11964.1 [Arabidopsis thaliana] Length = 1838 Score = 33.9 bits (76), Expect = 5.5 Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 22/110 (20%) Query: 379 RYLSELVSSEIRAASDGDANRGGFSLKGLGKEIQCNMTYDEVMDVINAHLDKK------- 431 +++S+ E + G A+RG +G+ +E Y + D+ + +LD++ Sbjct: 1733 KFISQTAILEFKC---GVADRGRSLFEGVLRE------YPKRTDLWSVYLDQEIRLGEDD 1783 Query: 432 GVGAIFEALVEADWGVERMREIFKKWMAYEKANSGDVERVKCMAKQYVQQ 481 + ++FE + ++M+ +FKK++ YEK + GD ERV +YV+Q Sbjct: 1784 VIRSLFERAISLSLPPKKMKFLFKKFLEYEK-SVGDEERV-----EYVKQ 1827 >gi|6671953|gb|AAF23213.1|AC016795_26 putative pre-rRNA processing protein, 5' partial [Arabidopsis thaliana] Length = 1111 Score = 33.9 bits (76), Expect = 5.5 Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 22/110 (20%) Query: 379 RYLSELVSSEIRAASDGDANRGGFSLKGLGKEIQCNMTYDEVMDVINAHLDKK------- 431 +++S+ E + G A+RG +G+ +E Y + D+ + +LD++ Sbjct: 1006 KFISQTAILEFKC---GVADRGRSLFEGVLRE------YPKRTDLWSVYLDQEIRLGEDD 1056 Query: 432 GVGAIFEALVEADWGVERMREIFKKWMAYEKANSGDVERVKCMAKQYVQQ 481 + ++FE + ++M+ +FKK++ YEK + GD ERV +YV+Q Sbjct: 1057 VIRSLFERAISLSLPPKKMKFLFKKFLEYEK-SVGDEERV-----EYVKQ 1100 >gi|7481586|pir||T35989 probable translation initiation factor - Streptomyces coelicolor (fragment) Length = 252 Score = 33.5 bits (75), Expect = 7.2 Identities = 54/212 (25%), Positives = 87/212 (40%), Gaps = 45/212 (21%) Query: 205 IIVQDGAISVMVLEKSTT-VQKGELVTVRVLDETFGRYVGTLRRFDIKVGMVADALVRNI 263 II D + SV LE S + GE V +RVL R VG + DI + M +DA+V Sbjct: 54 IIKGDASGSVEALESSLLQLDVGEEVDIRVLH----RGVGAVTESDIDLAMGSDAIVIGF 109 Query: 264 TDRAAFVEVNGISGR-MKLNECNSINTKYVRGVVYKVDEDKQQFEFSVKRYLKMARENEL 322 RAA GR ++ E ++ +Y V+Y+ E+ ++ LK + E Sbjct: 110 NVRAA--------GRAAQMAEREGVDVRYY-SVIYQAIEE-------IEAALKGMLKPEY 153 Query: 323 EEALISLPFTEADGEGCTEIPVTDACRSEASAHAEAAVCESAKRRKTHAAHRPGFGRYLS 382 EE + G EI + RS + + S + ++ A G+ ++ Sbjct: 154 EEVEL----------GTAEI--REVFRSSKLGNIAGVLIRSGEVKRNTKARLLRDGKVIA 201 Query: 383 ELVS-----------SEIRAASDGDANRGGFS 403 E ++ +EIR +G N G F+ Sbjct: 202 ENLNIEGLRRFKDDVTEIREGFEGGINLGNFN 233 >gi|3122814|sp|O06000|RS1H_BACCE 30S RIBOSOMAL PROTEIN S1 HOMOLOG gi|2094771|emb|CAA70584.1| 30S ribosomal protein S1 [Bacillus cereus] Length = 382 Score = 33.5 bits (75), Expect = 7.2 Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 10/72 (13%) Query: 250 IKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKY----------VRGVVYKV 299 +K G V + V+ +TD AFV V G+ G + +++ + + V+ V V Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245 Query: 300 DEDKQQFEFSVK 311 D D Q+ S+K Sbjct: 246 DADTQRISLSIK 257 >gi|2495190|sp|P80960|RTA_RAPTH Hemocyanin (RTA) Length = 406 Score = 33.5 bits (75), Expect = 7.2 Identities = 23/83 (27%), Positives = 42/83 (49%), Gaps = 8/83 (9%) Query: 378 GRYLSELVSSEIRAASDGDANRGGFSLKGLGKEIQCNMTYDEVMDVINAHLDKKGVGAIF 437 G +S+L SS +R + D GF L+G+G ++T+D + + H D G A+ Sbjct: 279 GMTISQLESSLLRLQKEEDRVFAGFLLRGIGS--SADVTFD--LCDKDEHCDFAGTFAVL 334 Query: 438 EALVEADWGVERMR----EIFKK 456 +E W +R++ ++FK+ Sbjct: 335 GGPLEMPWSFDRLKMDVTKVFKQ 357 >gi|24413891|emb|CAD55362.1| probable translational initiation factor; putative translation initiation factor IF-2(fragment) [Streptomyces coelicolor A3(2)] Length = 1033 Score = 33.5 bits (75), Expect = 7.2 Identities = 54/212 (25%), Positives = 87/212 (40%), Gaps = 45/212 (21%) Query: 205 IIVQDGAISVMVLEKSTT-VQKGELVTVRVLDETFGRYVGTLRRFDIKVGMVADALVRNI 263 II D + SV LE S + GE V +RVL R VG + DI + M +DA+V Sbjct: 835 IIKGDASGSVEALESSLLQLDVGEEVDIRVLH----RGVGAVTESDIDLAMGSDAIVIGF 890 Query: 264 TDRAAFVEVNGISGR-MKLNECNSINTKYVRGVVYKVDEDKQQFEFSVKRYLKMARENEL 322 RAA GR ++ E ++ +Y V+Y+ E+ ++ LK + E Sbjct: 891 NVRAA--------GRAAQMAEREGVDVRYY-SVIYQAIEE-------IEAALKGMLKPEY 934 Query: 323 EEALISLPFTEADGEGCTEIPVTDACRSEASAHAEAAVCESAKRRKTHAAHRPGFGRYLS 382 EE + G EI + RS + + S + ++ A G+ ++ Sbjct: 935 EEVEL----------GTAEI--REVFRSSKLGNIAGVLIRSGEVKRNTKARLLRDGKVIA 982 Query: 383 ELVS-----------SEIRAASDGDANRGGFS 403 E ++ +EIR +G N G F+ Sbjct: 983 ENLNIEGLRRFKDDVTEIREGFEGGINLGNFN 1014 >gi|16127817|ref|NP_422381.1| ribosomal protein S1 [Caulobacter crescentus CB15] gi|25294428|pir||A87694 ribosomal protein S1 [imported] - Caulobacter crescentus gi|13425331|gb|AAK25549.1| ribosomal protein S1 [Caulobacter crescentus CB15] Length = 565 Score = 33.5 bits (75), Expect = 7.2 Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 28/107 (26%) Query: 216 VLEKSTTVQKGELVTVRVLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGI 275 +LE++ Q+ ELV+ ++ G + + +V+NITD AFV++ GI Sbjct: 179 ILEEARAEQRTELVS------------------QLQEGEIREGVVKNITDYGAFVDLGGI 220 Query: 276 SGRMKLNECNSINTKY----------VRGVVYKVDEDKQQFEFSVKR 312 G + + + + + V+ + K++ D Q+ +K+ Sbjct: 221 DGLLHVTDMSWKRVNHPSQVLAVGDTVKVQIVKINPDTQRISLGMKQ 267 >gi|22966595|gb|ZP_00014191.1| hypothetical protein [Rhodospirillum rubrum] Length = 573 Score = 33.5 bits (75), Expect = 7.2 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 225 KGELVTVR--VLDETFGRYVGTLRRFDIKVGMVADALVRNITDRAAFVEVNGISGRMKLN 282 +G +V R VL+ET L ++ G + + +V+NITD AFV++ G+ G + + Sbjct: 173 RGNIVVSRRAVLEETRAEERSKLME-TLREGEILEGVVKNITDYGAFVDLGGVDGLLHVT 231 Query: 283 E 283 + Sbjct: 232 D 232 >gi|3550606|emb|CAA05850.1| dihydrofolate reductase-thymidylate synthase [Plasmodium vivax] Length = 237 Score = 33.5 bits (75), Expect = 7.2 Identities = 15/35 (42%), Positives = 25/35 (70%), Gaps = 1/35 (2%) Query: 283 ECNSINTKYVRGVVYKVDEDK-QQFEFSVKRYLKM 316 +CNS++ KY+R V VDE K ++ ++ +RYL+M Sbjct: 48 KCNSVDMKYLRSVTTYVDESKYEKLKWKRERYLRM 82 >gi|21399415|ref|NP_655400.1| S1, S1 RNA binding domain [Bacillus anthracis A2012] Length = 382 Score = 33.5 bits (75), Expect = 7.2 Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 10/72 (13%) Query: 250 IKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKY----------VRGVVYKV 299 +K G V + V+ +TD AFV V G+ G + +++ + + V+ V V Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245 Query: 300 DEDKQQFEFSVK 311 D D Q+ S+K Sbjct: 246 DADTQRISLSIK 257 >gi|42900|emb|CAA23644.1| S1 ribosomal protein [Escherichia coli] Length = 556 Score = 33.1 bits (74), Expect = 9.4 Identities = 15/53 (28%), Positives = 29/53 (54%) Query: 249 DIKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGVVYKVDE 301 +++ GM +V+N+TD AFV++ G+ G + + + K+ +V DE Sbjct: 187 NLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE 239 >gi|16121672|ref|NP_404985.1| 30S ribosomal protein S1 [Yersinia pestis] gi|22126658|ref|NP_670081.1| 30S ribosomal subunit protein S1 [Yersinia pestis KIM] gi|25294434|pir||AB0170 30S ribosomal protein S1 [imported] - Yersinia pestis (strain CO92) gi|15979441|emb|CAC90221.1| 30S ribosomal protein S1 [Yersinia pestis CO92] gi|21959672|gb|AAM86332.1|AE013881_2 30S ribosomal subunit protein S1 [Yersinia pestis KIM] Length = 557 Score = 33.1 bits (74), Expect = 9.4 Identities = 15/53 (28%), Positives = 29/53 (54%) Query: 249 DIKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGVVYKVDE 301 +++ GM +V+N+TD AFV++ G+ G + + + K+ +V DE Sbjct: 188 NLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE 240 >gi|15800772|ref|NP_286786.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 EDL933] gi|15830248|ref|NP_309021.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7] gi|16128878|ref|NP_415431.1| 30S ribosomal subunit protein S1 [Escherichia coli K12] gi|24112320|ref|NP_706830.1| 30S ribosomal subunit protein S1 [Shigella flexneri 2a str. 301] gi|26246936|ref|NP_752976.1| 30S ribosomal protein S1 [Escherichia coli CFT073] gi|2507321|sp|P02349|RS1_ECOLI 30S ribosomal protein S1 gi|7428655|pir||R3EC1 ribosomal protein S1 [validated] - Escherichia coli (strain K-12) gi|25294427|pir||B90753 30S ribosomal subunit protein S1 [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi|25294432|pir||H85616 30S ribosomal subunit protein S1 [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|1651439|dbj|BAA35655.1| 30S ribosomal protein S1. [Escherichia coli] gi|1787140|gb|AAC73997.1| 30S ribosomal subunit protein S1 [Escherichia coli K12] gi|12514077|gb|AAG55396.1|AE005280_7 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 EDL933] gi|13360453|dbj|BAB34417.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7] gi|24051180|gb|AAN42537.1|AE015119_7 30S ribosomal subunit protein S1 [Shigella flexneri 2a str. 301] gi|26107336|gb|AAN79519.1|AE016758_123 30S ribosomal protein S1 [Escherichia coli CFT073] Length = 557 Score = 33.1 bits (74), Expect = 9.4 Identities = 15/53 (28%), Positives = 29/53 (54%) Query: 249 DIKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGVVYKVDE 301 +++ GM +V+N+TD AFV++ G+ G + + + K+ +V DE Sbjct: 188 NLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE 240 >gi|16759851|ref|NP_455468.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica serovar Typhi] gi|16764341|ref|NP_459956.1| 30S ribosomal subunit protein S1 [Salmonella typhimurium LT2] gi|25294435|pir||AC0614 30S ribosomal protein S1 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419493|gb|AAL19915.1| 30S ribosomal subunit protein S1 [Salmonella typhimurium LT2] gi|16502144|emb|CAD05381.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica serovar Typhi] Length = 557 Score = 33.1 bits (74), Expect = 9.4 Identities = 15/53 (28%), Positives = 29/53 (54%) Query: 249 DIKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGVVYKVDE 301 +++ GM +V+N+TD AFV++ G+ G + + + K+ +V DE Sbjct: 188 NLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE 240 >gi|223404|prf||0804233A protein S1 Length = 557 Score = 33.1 bits (74), Expect = 9.4 Identities = 15/53 (28%), Positives = 29/53 (54%) Query: 249 DIKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGVVYKVDE 301 +++ GM +V+N+TD AFV++ G+ G + + + K+ +V DE Sbjct: 188 NLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE 240 >gi|133870|sp|P14128|RS1_PROSP 30S ribosomal protein S1 gi|897799|emb|CAA26596.1| ribosomal protein S1 fragment (1135 is 1st base in codon) [Providencia sp.] Length = 378 Score = 33.1 bits (74), Expect = 9.4 Identities = 15/53 (28%), Positives = 29/53 (54%) Query: 249 DIKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGVVYKVDE 301 +++ GM +V+N+TD AFV++ G+ G + + + K+ +V DE Sbjct: 83 NLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE 135 >gi|42837|emb|CAA23630.1| reading frame S1 [Escherichia coli] Length = 556 Score = 33.1 bits (74), Expect = 9.4 Identities = 15/53 (28%), Positives = 29/53 (54%) Query: 249 DIKVGMVADALVRNITDRAAFVEVNGISGRMKLNECNSINTKYVRGVVYKVDE 301 +++ GM +V+N+TD AFV++ G+ G + + + K+ +V DE Sbjct: 187 NLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE 239 >gi|10955106|ref|NP_059762.1| repA [Agrobacterium tumefaciens] gi|95114|pir||A32812 repA protein - Agrobacterium tumefaciens plasmid pTiB6S3 gi|154804|gb|AAA27402.1| repA protein (GTG start codon) gi|8572703|gb|AAF77149.1| repA [Agrobacterium tumefaciens] Length = 405 Score = 33.1 bits (74), Expect = 9.4 Identities = 20/63 (31%), Positives = 33/63 (51%), Gaps = 6/63 (9%) Query: 384 LVSSEIRAASDGDANRGGFSLKGLGKEIQCNMTYDEVMDVINAHLDKKGVGAIFEALVEA 443 L + +++A+ DA +L +G+E TYD M+ ++A V A EAL++A Sbjct: 347 LTNPMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDRAMESLDA------VNAEIEALIKA 400 Query: 444 DWG 446 WG Sbjct: 401 AWG 403 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Dec 22, 2002 5:04 AM Number of letters in database: 405,910,324 Number of sequences in database: 1,269,806 Lambda K H 0.319 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 342,972,207 Number of Sequences: 1269806 Number of extensions: 13675490 Number of successful extensions: 43075 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 38 Number of HSP's that attempted gapping in prelim test: 42987 Number of HSP's gapped (non-prelim): 119 length of query: 484 length of database: 405,910,324 effective HSP length: 127 effective length of query: 357 effective length of database: 244,644,962 effective search space: 87338251434 effective search space used: 87338251434 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 74 (33.1 bits)