Assignment 2: Make a dot plot

Step 1: Create output comparing the following two genomes, just like in the first assignment.
  • Mycobacterium tuberculosis CDC1551 (TBCDC1551.1con)
  • Mycobacterium tuberculosis H37rv (TBH37rv.1con)
    Perform the comparison on the nucleotide level.

    Step 2: Parse the output to find all matches.

    SPECIAL HINT: The output of the mummer does not come in numerical order but at least one solution does not require that the data be sorted.

    Step 3: "Publish" your results into a png file.

    Of course your png file could also be displayed in a web page, but because you'll probably have to do a lot of debuggin, just have it write the png to disk and view it on the command line.

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